Hb_000240_090

Information

Type -
Description -
Location Contig240: 167744-180328
Sequence    

Annotation

kegg
ID tcc:TCM_029326
description RAB isoform 1
nr
ID AGL52580.1
description Rab5 [Hevea brasiliensis]
swissprot
ID P31582
description Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1 SV=1
trembl
ID A0A023HJ60
description Rab5 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabf2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25136: 167757-180263
cDNA
(Sanger)
(ID:Location)		 013_C04.ab1: 167998-180172 , 037_D07.ab1: 168020-180239 , 038_H12.ab1: 167992-180209 , 047_L17.ab1: 168027-180209

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000240_090 0.0 - - Rab5 [Hevea brasiliensis]
2 Hb_000120_680 0.0545073986 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
3 Hb_004635_100 0.055883116 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
4 Hb_129204_030 0.0688195014 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
5 Hb_000347_410 0.071116801 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
6 Hb_029866_020 0.0721233979 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
7 Hb_021409_030 0.0742682107 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
8 Hb_001396_100 0.0755343362 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000086_280 0.0762405074 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
10 Hb_012675_060 0.0763662857 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
11 Hb_001059_030 0.07743181 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
12 Hb_031862_110 0.0777772002 - - calcium-dependent protein kinase [Hevea brasiliensis]
13 Hb_002163_020 0.0781396634 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
14 Hb_012753_160 0.0785381061 - - ara4-interacting protein, putative [Ricinus communis]
15 Hb_001616_030 0.0789508493 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
16 Hb_000563_250 0.0798167787 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
17 Hb_001140_060 0.0802514428 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
18 Hb_000638_250 0.0815132852 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_158467_010 0.0823481563 - - transporter, putative [Ricinus communis]
20 Hb_004586_320 0.0831151068 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]

Gene co-expression network

sample Hb_000240_090 Hb_000240_090 Hb_000120_680 Hb_000120_680 Hb_000240_090--Hb_000120_680 Hb_004635_100 Hb_004635_100 Hb_000240_090--Hb_004635_100 Hb_129204_030 Hb_129204_030 Hb_000240_090--Hb_129204_030 Hb_000347_410 Hb_000347_410 Hb_000240_090--Hb_000347_410 Hb_029866_020 Hb_029866_020 Hb_000240_090--Hb_029866_020 Hb_021409_030 Hb_021409_030 Hb_000240_090--Hb_021409_030 Hb_000617_150 Hb_000617_150 Hb_000120_680--Hb_000617_150 Hb_000120_680--Hb_004635_100 Hb_000563_250 Hb_000563_250 Hb_000120_680--Hb_000563_250 Hb_001699_130 Hb_001699_130 Hb_000120_680--Hb_001699_130 Hb_000622_090 Hb_000622_090 Hb_000120_680--Hb_000622_090 Hb_001059_030 Hb_001059_030 Hb_004635_100--Hb_001059_030 Hb_000915_090 Hb_000915_090 Hb_004635_100--Hb_000915_090 Hb_029879_130 Hb_029879_130 Hb_004635_100--Hb_029879_130 Hb_000676_180 Hb_000676_180 Hb_004635_100--Hb_000676_180 Hb_000608_370 Hb_000608_370 Hb_129204_030--Hb_000608_370 Hb_000167_140 Hb_000167_140 Hb_129204_030--Hb_000167_140 Hb_001047_230 Hb_001047_230 Hb_129204_030--Hb_001047_230 Hb_129204_030--Hb_021409_030 Hb_001277_070 Hb_001277_070 Hb_129204_030--Hb_001277_070 Hb_000146_020 Hb_000146_020 Hb_000347_410--Hb_000146_020 Hb_000347_410--Hb_029866_020 Hb_000025_120 Hb_000025_120 Hb_000347_410--Hb_000025_120 Hb_003376_030 Hb_003376_030 Hb_000347_410--Hb_003376_030 Hb_004586_320 Hb_004586_320 Hb_000347_410--Hb_004586_320 Hb_001396_100 Hb_001396_100 Hb_029866_020--Hb_001396_100 Hb_005731_170 Hb_005731_170 Hb_029866_020--Hb_005731_170 Hb_011953_020 Hb_011953_020 Hb_029866_020--Hb_011953_020 Hb_007943_090 Hb_007943_090 Hb_029866_020--Hb_007943_090 Hb_004375_140 Hb_004375_140 Hb_021409_030--Hb_004375_140 Hb_138585_060 Hb_138585_060 Hb_021409_030--Hb_138585_060 Hb_021409_030--Hb_000608_370 Hb_012753_160 Hb_012753_160 Hb_021409_030--Hb_012753_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.3942 45.2313 54.8688 59.416 72.7442 73.4062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
156.722 182.602 186.268 56.7627 56.0169

CAGE analysis