Hb_000111_450

Information

Type -
Description -
Location Contig111: 399339-403651
Sequence    

Annotation

kegg
ID rcu:RCOM_0620800
description choline/ethanolamine kinase, putative (EC:2.7.1.82)
nr
ID XP_012068722.1
description PREDICTED: probable choline kinase 2 [Jatropha curcas]
swissprot
ID Q8L518
description Probable choline kinase 2 OS=Arabidopsis thaliana GN=At1g74320 PE=2 SV=1
trembl
ID A0A067KWM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24566 PE=4 SV=1
Gene Ontology
ID GO:0004305
description probable choline kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03425: 399558-403569 , PASA_asmbl_03426: 399572-403634
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_450 0.0 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
2 Hb_013405_140 0.0823317937 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
3 Hb_011485_020 0.0885011292 - - protein with unknown function [Ricinus communis]
4 Hb_002284_200 0.0919980175 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
5 Hb_000479_160 0.0956793546 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]
6 Hb_003994_190 0.0958062048 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001776_160 0.0962199629 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
8 Hb_002016_080 0.0968878591 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
9 Hb_004705_080 0.0972530948 transcription factor TF Family: ARF transcription factor, putative [Ricinus communis]
10 Hb_007037_020 0.0991023434 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
11 Hb_005928_100 0.1020693032 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
12 Hb_000436_030 0.1070257198 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003540_030 0.1083644462 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
14 Hb_003783_030 0.1088478105 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
15 Hb_011021_040 0.1100069926 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
16 Hb_000340_310 0.1110206401 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
17 Hb_005545_100 0.1136044597 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
18 Hb_001279_340 0.1138433153 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
19 Hb_000424_200 0.1150164132 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
20 Hb_001172_120 0.1154688221 - - hypothetical protein B456_012G082000 [Gossypium raimondii]

Gene co-expression network

sample Hb_000111_450 Hb_000111_450 Hb_013405_140 Hb_013405_140 Hb_000111_450--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_000111_450--Hb_011485_020 Hb_002284_200 Hb_002284_200 Hb_000111_450--Hb_002284_200 Hb_000479_160 Hb_000479_160 Hb_000111_450--Hb_000479_160 Hb_003994_190 Hb_003994_190 Hb_000111_450--Hb_003994_190 Hb_001776_160 Hb_001776_160 Hb_000111_450--Hb_001776_160 Hb_002016_080 Hb_002016_080 Hb_013405_140--Hb_002016_080 Hb_013405_140--Hb_011485_020 Hb_000673_020 Hb_000673_020 Hb_013405_140--Hb_000673_020 Hb_007037_020 Hb_007037_020 Hb_013405_140--Hb_007037_020 Hb_003783_030 Hb_003783_030 Hb_013405_140--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_013405_140--Hb_011021_040 Hb_000436_030 Hb_000436_030 Hb_011485_020--Hb_000436_030 Hb_011485_020--Hb_002016_080 Hb_011485_020--Hb_000479_160 Hb_001053_140 Hb_001053_140 Hb_011485_020--Hb_001053_140 Hb_011485_020--Hb_007037_020 Hb_019263_020 Hb_019263_020 Hb_002284_200--Hb_019263_020 Hb_000748_130 Hb_000748_130 Hb_002284_200--Hb_000748_130 Hb_001279_340 Hb_001279_340 Hb_002284_200--Hb_001279_340 Hb_000563_250 Hb_000563_250 Hb_002284_200--Hb_000563_250 Hb_000366_090 Hb_000366_090 Hb_002284_200--Hb_000366_090 Hb_000479_160--Hb_000436_030 Hb_000320_330 Hb_000320_330 Hb_000479_160--Hb_000320_330 Hb_000483_390 Hb_000483_390 Hb_000479_160--Hb_000483_390 Hb_000638_170 Hb_000638_170 Hb_000479_160--Hb_000638_170 Hb_003994_190--Hb_001279_340 Hb_005928_100 Hb_005928_100 Hb_003994_190--Hb_005928_100 Hb_000130_110 Hb_000130_110 Hb_003994_190--Hb_000130_110 Hb_000340_310 Hb_000340_310 Hb_003994_190--Hb_000340_310 Hb_002043_050 Hb_002043_050 Hb_003994_190--Hb_002043_050 Hb_006831_120 Hb_006831_120 Hb_001776_160--Hb_006831_120 Hb_027654_050 Hb_027654_050 Hb_001776_160--Hb_027654_050 Hb_001085_120 Hb_001085_120 Hb_001776_160--Hb_001085_120 Hb_002110_200 Hb_002110_200 Hb_001776_160--Hb_002110_200 Hb_001512_080 Hb_001512_080 Hb_001776_160--Hb_001512_080 Hb_002742_090 Hb_002742_090 Hb_001776_160--Hb_002742_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9503 7.71582 18.3855 17.9977 5.42234 9.63595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5794 46.669 47.8942 18.0326 12.2345

CAGE analysis