Hb_002043_050

Information

Type -
Description -
Location Contig2043: 78209-90604
Sequence    

Annotation

kegg
ID pop:POPTR_0003s04010g
description POPTRDRAFT_711792; putative auxin-amidohydrolase precursor family protein
nr
ID XP_012069038.1
description PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
swissprot
ID O04373
description IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2
trembl
ID A0A067KX95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24815 PE=4 SV=1
Gene Ontology
ID GO:0016787
description iaa-amino acid hydrolase ilr1-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20974: 78208-90506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_050 0.0 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
2 Hb_005928_100 0.0970988641 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
3 Hb_000120_960 0.1048962464 - - isocitrate dehydrogenase, putative [Ricinus communis]
4 Hb_003994_190 0.1121612632 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001279_340 0.1145834383 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
6 Hb_010407_180 0.1153529538 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
7 Hb_000155_200 0.1217545972 - - Rab7 [Hevea brasiliensis]
8 Hb_000117_090 0.1219039982 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
9 Hb_000962_050 0.1252812952 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
10 Hb_000175_340 0.1273667719 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
11 Hb_007044_120 0.1304297917 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
12 Hb_000039_160 0.1305792125 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
13 Hb_001545_100 0.1306188273 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
14 Hb_008566_050 0.1318495035 - - phosphoglycerate mutase, putative [Ricinus communis]
15 Hb_000086_280 0.1329052751 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
16 Hb_002284_200 0.133699662 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
17 Hb_006711_060 0.1338665379 - - Tubulin beta-1 chain [Morus notabilis]
18 Hb_000563_250 0.1340319293 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
19 Hb_001195_360 0.1342076609 - - PREDICTED: random slug protein 5 [Jatropha curcas]
20 Hb_003540_030 0.1352420958 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002043_050 Hb_002043_050 Hb_005928_100 Hb_005928_100 Hb_002043_050--Hb_005928_100 Hb_000120_960 Hb_000120_960 Hb_002043_050--Hb_000120_960 Hb_003994_190 Hb_003994_190 Hb_002043_050--Hb_003994_190 Hb_001279_340 Hb_001279_340 Hb_002043_050--Hb_001279_340 Hb_010407_180 Hb_010407_180 Hb_002043_050--Hb_010407_180 Hb_000155_200 Hb_000155_200 Hb_002043_050--Hb_000155_200 Hb_000111_450 Hb_000111_450 Hb_005928_100--Hb_000111_450 Hb_005928_100--Hb_010407_180 Hb_002284_200 Hb_002284_200 Hb_005928_100--Hb_002284_200 Hb_005928_100--Hb_003994_190 Hb_005928_100--Hb_000120_960 Hb_002660_070 Hb_002660_070 Hb_000120_960--Hb_002660_070 Hb_000120_960--Hb_010407_180 Hb_000086_280 Hb_000086_280 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_020805_130 Hb_020805_130 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120 Hb_003994_190--Hb_000111_450 Hb_003994_190--Hb_001279_340 Hb_000130_110 Hb_000130_110 Hb_003994_190--Hb_000130_110 Hb_000340_310 Hb_000340_310 Hb_003994_190--Hb_000340_310 Hb_006831_120 Hb_006831_120 Hb_001279_340--Hb_006831_120 Hb_001279_340--Hb_002660_070 Hb_001279_340--Hb_000120_960 Hb_001279_340--Hb_002284_200 Hb_001279_340--Hb_010407_180 Hb_001545_100 Hb_001545_100 Hb_001279_340--Hb_001545_100 Hb_000125_030 Hb_000125_030 Hb_010407_180--Hb_000125_030 Hb_000563_250 Hb_000563_250 Hb_010407_180--Hb_000563_250 Hb_003582_040 Hb_003582_040 Hb_010407_180--Hb_003582_040 Hb_012114_070 Hb_012114_070 Hb_000155_200--Hb_012114_070 Hb_000205_090 Hb_000205_090 Hb_000155_200--Hb_000205_090 Hb_004109_170 Hb_004109_170 Hb_000155_200--Hb_004109_170 Hb_000367_160 Hb_000367_160 Hb_000155_200--Hb_000367_160 Hb_000155_200--Hb_000120_960 Hb_000340_570 Hb_000340_570 Hb_000155_200--Hb_000340_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7715 7.13197 19.1063 7.09078 9.22079 6.11067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8274 24.1289 38.6022 6.85291 6.92397

CAGE analysis