Hb_000436_030

Information

Type -
Description -
Location Contig436: 44795-48511
Sequence    

Annotation

kegg
ID rcu:RCOM_0977150
description hypothetical protein
nr
ID XP_002521257.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5I8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0977150 PE=3 SV=1
Gene Ontology
ID GO:0016020
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42450: 44931-48568
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000436_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011485_020 0.068344416 - - protein with unknown function [Ricinus communis]
3 Hb_000320_330 0.0711158882 - - uncharacterized protein LOC100527884 [Glycine max]
4 Hb_000479_160 0.0780953165 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]
5 Hb_000292_060 0.0904773534 - - transporter, putative [Ricinus communis]
6 Hb_001329_150 0.0945133337 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
7 Hb_005269_080 0.0948357159 - - protein with unknown function [Ricinus communis]
8 Hb_000254_050 0.096068906 - - hypothetical protein VITISV_010510 [Vitis vinifera]
9 Hb_002303_060 0.0973364973 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001053_140 0.0975271849 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
11 Hb_068056_030 0.097606716 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
12 Hb_000384_120 0.0982146205 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
13 Hb_019113_020 0.0993223714 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
14 Hb_007037_020 0.0993243397 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
15 Hb_000096_150 0.1005384922 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
16 Hb_000056_250 0.101571408 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
17 Hb_000417_260 0.1040072859 - - protein with unknown function [Ricinus communis]
18 Hb_000419_070 0.1041583658 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
19 Hb_011021_040 0.1057959308 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
20 Hb_000111_450 0.1070257198 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000436_030 Hb_000436_030 Hb_011485_020 Hb_011485_020 Hb_000436_030--Hb_011485_020 Hb_000320_330 Hb_000320_330 Hb_000436_030--Hb_000320_330 Hb_000479_160 Hb_000479_160 Hb_000436_030--Hb_000479_160 Hb_000292_060 Hb_000292_060 Hb_000436_030--Hb_000292_060 Hb_001329_150 Hb_001329_150 Hb_000436_030--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_000436_030--Hb_005269_080 Hb_013405_140 Hb_013405_140 Hb_011485_020--Hb_013405_140 Hb_002016_080 Hb_002016_080 Hb_011485_020--Hb_002016_080 Hb_011485_020--Hb_000479_160 Hb_001053_140 Hb_001053_140 Hb_011485_020--Hb_001053_140 Hb_007037_020 Hb_007037_020 Hb_011485_020--Hb_007037_020 Hb_000384_120 Hb_000384_120 Hb_000320_330--Hb_000384_120 Hb_003633_060 Hb_003633_060 Hb_000320_330--Hb_003633_060 Hb_000320_330--Hb_000479_160 Hb_001172_100 Hb_001172_100 Hb_000320_330--Hb_001172_100 Hb_000320_330--Hb_011485_020 Hb_000111_450 Hb_000111_450 Hb_000479_160--Hb_000111_450 Hb_000483_390 Hb_000483_390 Hb_000479_160--Hb_000483_390 Hb_000638_170 Hb_000638_170 Hb_000479_160--Hb_000638_170 Hb_002324_010 Hb_002324_010 Hb_000292_060--Hb_002324_010 Hb_005278_040 Hb_005278_040 Hb_000292_060--Hb_005278_040 Hb_000292_060--Hb_000320_330 Hb_000417_260 Hb_000417_260 Hb_000292_060--Hb_000417_260 Hb_000292_060--Hb_000638_170 Hb_001329_150--Hb_001053_140 Hb_000419_070 Hb_000419_070 Hb_001329_150--Hb_000419_070 Hb_000571_020 Hb_000571_020 Hb_001329_150--Hb_000571_020 Hb_002000_140 Hb_002000_140 Hb_001329_150--Hb_002000_140 Hb_002303_060 Hb_002303_060 Hb_001329_150--Hb_002303_060 Hb_000189_240 Hb_000189_240 Hb_001329_150--Hb_000189_240 Hb_005269_080--Hb_002303_060 Hb_000922_040 Hb_000922_040 Hb_005269_080--Hb_000922_040 Hb_000254_050 Hb_000254_050 Hb_005269_080--Hb_000254_050 Hb_005269_080--Hb_000384_120 Hb_005269_080--Hb_001053_140 Hb_000701_100 Hb_000701_100 Hb_005269_080--Hb_000701_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42397 4.08901 12.5205 19.7056 4.6835 7.8425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8468 35.9397 29.2212 9.36571 14.7914

CAGE analysis