Hb_000292_060

Information

Type -
Description -
Location Contig292: 122483-123266
Sequence    

Annotation

kegg
ID rcu:RCOM_0519480
description transporter, putative
nr
ID XP_002528763.1
description transporter, putative [Ricinus communis]
swissprot
ID Q9AST6
description Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1
trembl
ID B9SRZ4
description Transporter, putative OS=Ricinus communis GN=RCOM_0519480 PE=4 SV=1
Gene Ontology
ID GO:0005773
description vacuolar protein sorting-associated protein 55 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30633: 122482-153448
cDNA
(Sanger)
(ID:Location)		 041_J06.ab1: 122573-153359

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000292_060 0.0 - - transporter, putative [Ricinus communis]
2 Hb_000436_030 0.0904773534 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002324_010 0.0916388495 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
4 Hb_005278_040 0.0936744113 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
5 Hb_000320_330 0.1089379782 - - uncharacterized protein LOC100527884 [Glycine max]
6 Hb_000417_260 0.109729207 - - protein with unknown function [Ricinus communis]
7 Hb_000638_170 0.1134921717 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
8 Hb_002303_060 0.1152753657 - - conserved hypothetical protein [Ricinus communis]
9 Hb_148209_010 0.1154450829 - - RAS-related GTP-binding family protein [Populus trichocarpa]
10 Hb_003894_080 0.1155310351 - - PREDICTED: protein cornichon homolog 4 [Vitis vinifera]
11 Hb_068056_030 0.1157433786 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
12 Hb_145880_020 0.1194274523 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
13 Hb_002631_260 0.1194483245 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
14 Hb_000479_160 0.1200832662 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]
15 Hb_000322_140 0.1201462817 - - hypothetical protein RCOM_1047200 [Ricinus communis]
16 Hb_000056_250 0.1203727563 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
17 Hb_011377_050 0.1206038788 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
18 Hb_000127_120 0.1208679071 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000384_120 0.1245580182 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
20 Hb_005269_080 0.1257814715 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000292_060 Hb_000292_060 Hb_000436_030 Hb_000436_030 Hb_000292_060--Hb_000436_030 Hb_002324_010 Hb_002324_010 Hb_000292_060--Hb_002324_010 Hb_005278_040 Hb_005278_040 Hb_000292_060--Hb_005278_040 Hb_000320_330 Hb_000320_330 Hb_000292_060--Hb_000320_330 Hb_000417_260 Hb_000417_260 Hb_000292_060--Hb_000417_260 Hb_000638_170 Hb_000638_170 Hb_000292_060--Hb_000638_170 Hb_011485_020 Hb_011485_020 Hb_000436_030--Hb_011485_020 Hb_000436_030--Hb_000320_330 Hb_000479_160 Hb_000479_160 Hb_000436_030--Hb_000479_160 Hb_001329_150 Hb_001329_150 Hb_000436_030--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_000436_030--Hb_005269_080 Hb_003376_190 Hb_003376_190 Hb_002324_010--Hb_003376_190 Hb_005045_070 Hb_005045_070 Hb_002324_010--Hb_005045_070 Hb_000384_120 Hb_000384_120 Hb_002324_010--Hb_000384_120 Hb_001172_100 Hb_001172_100 Hb_002324_010--Hb_001172_100 Hb_072922_020 Hb_072922_020 Hb_002324_010--Hb_072922_020 Hb_138585_040 Hb_138585_040 Hb_002324_010--Hb_138585_040 Hb_005278_040--Hb_000417_260 Hb_001008_090 Hb_001008_090 Hb_005278_040--Hb_001008_090 Hb_005278_040--Hb_002324_010 Hb_005278_040--Hb_000384_120 Hb_000056_250 Hb_000056_250 Hb_005278_040--Hb_000056_250 Hb_005278_040--Hb_138585_040 Hb_000320_330--Hb_000384_120 Hb_003633_060 Hb_003633_060 Hb_000320_330--Hb_003633_060 Hb_000320_330--Hb_000479_160 Hb_000320_330--Hb_001172_100 Hb_000320_330--Hb_011485_020 Hb_001005_080 Hb_001005_080 Hb_000417_260--Hb_001005_080 Hb_000417_260--Hb_000384_120 Hb_004672_010 Hb_004672_010 Hb_000417_260--Hb_004672_010 Hb_000417_260--Hb_001008_090 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140 Hb_009486_020 Hb_009486_020 Hb_000638_170--Hb_009486_020 Hb_002303_060 Hb_002303_060 Hb_000638_170--Hb_002303_060 Hb_000336_240 Hb_000336_240 Hb_000638_170--Hb_000336_240 Hb_114310_080 Hb_114310_080 Hb_000638_170--Hb_114310_080 Hb_000483_390 Hb_000483_390 Hb_000638_170--Hb_000483_390 Hb_000805_240 Hb_000805_240 Hb_000638_170--Hb_000805_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.39393 4.14657 21.7978 55.2692 7.91088 19.8775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.5488 71.0401 61.0287 16.1422 20.486

CAGE analysis