Hb_002324_010

Information

Type -
Description -
Location Contig2324: 2390-7442
Sequence    

Annotation

kegg
ID rcu:RCOM_0491390
description proteasome subunit alpha type, putative (EC:3.4.25.1)
nr
ID XP_012081758.1
description PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
swissprot
ID Q9SXU1
description Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1
trembl
ID A0A067KBK8
description Proteasome subunit alpha type OS=Jatropha curcas GN=JCGZ_18802 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24434: 2392-7420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002324_010 0.0 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
2 Hb_003376_190 0.0697593154 - - syntaxin, putative [Ricinus communis]
3 Hb_005045_070 0.0708407434 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
4 Hb_000384_120 0.0763923767 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
5 Hb_001172_100 0.0783731036 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
6 Hb_072922_020 0.0808101434 - - SNARE-like superfamily protein [Theobroma cacao]
7 Hb_138585_040 0.0846946357 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
8 Hb_000087_130 0.0865034479 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
9 Hb_005278_040 0.0884086772 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
10 Hb_000215_330 0.0911003082 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
11 Hb_000107_300 0.0911323358 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
12 Hb_005269_080 0.0913723378 - - protein with unknown function [Ricinus communis]
13 Hb_000292_060 0.0916388495 - - transporter, putative [Ricinus communis]
14 Hb_000417_260 0.091781189 - - protein with unknown function [Ricinus communis]
15 Hb_002631_260 0.0943027291 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
16 Hb_000320_330 0.0964924394 - - uncharacterized protein LOC100527884 [Glycine max]
17 Hb_006915_040 0.0987250691 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
18 Hb_005463_140 0.0990826157 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
19 Hb_002303_060 0.0993921384 - - conserved hypothetical protein [Ricinus communis]
20 Hb_148209_010 0.1003230422 - - RAS-related GTP-binding family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002324_010 Hb_002324_010 Hb_003376_190 Hb_003376_190 Hb_002324_010--Hb_003376_190 Hb_005045_070 Hb_005045_070 Hb_002324_010--Hb_005045_070 Hb_000384_120 Hb_000384_120 Hb_002324_010--Hb_000384_120 Hb_001172_100 Hb_001172_100 Hb_002324_010--Hb_001172_100 Hb_072922_020 Hb_072922_020 Hb_002324_010--Hb_072922_020 Hb_138585_040 Hb_138585_040 Hb_002324_010--Hb_138585_040 Hb_000107_300 Hb_000107_300 Hb_003376_190--Hb_000107_300 Hb_000215_330 Hb_000215_330 Hb_003376_190--Hb_000215_330 Hb_005235_030 Hb_005235_030 Hb_003376_190--Hb_005235_030 Hb_005269_080 Hb_005269_080 Hb_003376_190--Hb_005269_080 Hb_006915_040 Hb_006915_040 Hb_003376_190--Hb_006915_040 Hb_005045_070--Hb_001172_100 Hb_005045_070--Hb_072922_020 Hb_006452_040 Hb_006452_040 Hb_005045_070--Hb_006452_040 Hb_000087_130 Hb_000087_130 Hb_005045_070--Hb_000087_130 Hb_005045_070--Hb_003376_190 Hb_000384_120--Hb_072922_020 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_000384_120--Hb_005269_080 Hb_001172_100--Hb_138585_040 Hb_001172_100--Hb_000384_120 Hb_001225_010 Hb_001225_010 Hb_001172_100--Hb_001225_010 Hb_001157_080 Hb_001157_080 Hb_001172_100--Hb_001157_080 Hb_005463_140 Hb_005463_140 Hb_072922_020--Hb_005463_140 Hb_072922_020--Hb_000087_130 Hb_000302_280 Hb_000302_280 Hb_072922_020--Hb_000302_280 Hb_000254_050 Hb_000254_050 Hb_072922_020--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_072922_020--Hb_000789_230 Hb_000049_050 Hb_000049_050 Hb_138585_040--Hb_000049_050 Hb_138585_040--Hb_000384_120 Hb_002631_260 Hb_002631_260 Hb_138585_040--Hb_002631_260 Hb_005278_040 Hb_005278_040 Hb_138585_040--Hb_005278_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.1419 14.5147 34.8138 115.989 24.7602 39.423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.938 206.798 107.006 47.0283 40.3014

CAGE analysis