Hb_001157_080

Information

Type -
Description -
Location Contig1157: 60471-62481
Sequence    

Annotation

kegg
ID rcu:RCOM_1591240
description zinc finger protein, putative
nr
ID XP_002510246.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q91ZF0
description DnaJ homolog subfamily C member 24 OS=Mus musculus GN=Dnajc24 PE=1 SV=3
trembl
ID B9R7F3
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1591240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04709: 60412-62489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_080 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001172_100 0.0851048465 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
3 Hb_138585_040 0.0917701795 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
4 Hb_000302_280 0.0964766555 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
5 Hb_000707_020 0.1053954445 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
6 Hb_000384_120 0.1084740609 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
7 Hb_000049_050 0.1087747395 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
8 Hb_000574_130 0.11342551 - - calcineurin-like protein [Hevea brasiliensis]
9 Hb_005045_070 0.1148733657 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
10 Hb_000320_330 0.1167677226 - - uncharacterized protein LOC100527884 [Glycine max]
11 Hb_072922_020 0.1193273047 - - SNARE-like superfamily protein [Theobroma cacao]
12 Hb_002324_010 0.1199735285 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
13 Hb_005269_080 0.1218951515 - - protein with unknown function [Ricinus communis]
14 Hb_001225_010 0.1225100534 - - unnamed protein product [Coffea canephora]
15 Hb_083380_010 0.1228611883 - - -
16 Hb_003291_020 0.1238083882 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
17 Hb_005278_040 0.1247401426 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
18 Hb_000417_260 0.1254038312 - - protein with unknown function [Ricinus communis]
19 Hb_000056_250 0.1255929976 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
20 Hb_011485_020 0.125603677 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001157_080 Hb_001157_080 Hb_001172_100 Hb_001172_100 Hb_001157_080--Hb_001172_100 Hb_138585_040 Hb_138585_040 Hb_001157_080--Hb_138585_040 Hb_000302_280 Hb_000302_280 Hb_001157_080--Hb_000302_280 Hb_000707_020 Hb_000707_020 Hb_001157_080--Hb_000707_020 Hb_000384_120 Hb_000384_120 Hb_001157_080--Hb_000384_120 Hb_000049_050 Hb_000049_050 Hb_001157_080--Hb_000049_050 Hb_001172_100--Hb_138585_040 Hb_001172_100--Hb_000384_120 Hb_002324_010 Hb_002324_010 Hb_001172_100--Hb_002324_010 Hb_001225_010 Hb_001225_010 Hb_001172_100--Hb_001225_010 Hb_005045_070 Hb_005045_070 Hb_001172_100--Hb_005045_070 Hb_138585_040--Hb_000049_050 Hb_138585_040--Hb_002324_010 Hb_138585_040--Hb_000384_120 Hb_002631_260 Hb_002631_260 Hb_138585_040--Hb_002631_260 Hb_005278_040 Hb_005278_040 Hb_138585_040--Hb_005278_040 Hb_072922_020 Hb_072922_020 Hb_000302_280--Hb_072922_020 Hb_005463_140 Hb_005463_140 Hb_000302_280--Hb_005463_140 Hb_001369_170 Hb_001369_170 Hb_000302_280--Hb_001369_170 Hb_000302_280--Hb_000384_120 Hb_003376_190 Hb_003376_190 Hb_000302_280--Hb_003376_190 Hb_000302_280--Hb_000707_020 Hb_012490_050 Hb_012490_050 Hb_000707_020--Hb_012490_050 Hb_000834_030 Hb_000834_030 Hb_000707_020--Hb_000834_030 Hb_000707_020--Hb_138585_040 Hb_001005_080 Hb_001005_080 Hb_000707_020--Hb_001005_080 Hb_000707_020--Hb_000049_050 Hb_000384_120--Hb_072922_020 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_000384_120--Hb_002324_010 Hb_000049_050--Hb_002631_260 Hb_000260_790 Hb_000260_790 Hb_000049_050--Hb_000260_790 Hb_000049_050--Hb_001172_100 Hb_000049_050--Hb_005045_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.66079 1.54819 1.58953 7.50887 0.630717 3.29449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.62188 18.1599 9.11933 5.88438 4.88411

CAGE analysis