Hb_000834_030

Information

Type -
Description -
Location Contig834: 26352-30104
Sequence    

Annotation

kegg
ID pxb:103946435
description PXMP2/4 family protein 2-like
nr
ID XP_012076702.1
description PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
swissprot
ID Q54XX9
description PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1
trembl
ID A0A067KC03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07253 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein mpv17 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59866: 26302-30136 , PASA_asmbl_59867: 26578-29813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_030 0.0 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
2 Hb_012490_050 0.0755561281 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
3 Hb_000707_020 0.0917962664 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
4 Hb_005463_140 0.0922946376 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
5 Hb_003777_210 0.098132695 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
6 Hb_001284_030 0.098606051 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
7 Hb_000042_200 0.0990471445 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
8 Hb_033153_060 0.1016540945 - - Transcription elongation factor, putative [Ricinus communis]
9 Hb_001136_060 0.1017892117 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
10 Hb_004659_060 0.1051935741 - - RAS-related GTP-binding family protein [Populus trichocarpa]
11 Hb_000389_080 0.1065397889 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
12 Hb_000302_280 0.1126074135 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
13 Hb_001054_100 0.1128176867 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
14 Hb_072922_020 0.1135078956 - - SNARE-like superfamily protein [Theobroma cacao]
15 Hb_005307_050 0.1144845314 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
16 Hb_012539_020 0.1159608234 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
17 Hb_011644_030 0.1174716138 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
18 Hb_000030_200 0.1183802524 - - PREDICTED: early nodulin-93-like [Populus euphratica]
19 Hb_001155_040 0.1195403577 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
20 Hb_001005_080 0.1205135146 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000834_030 Hb_000834_030 Hb_012490_050 Hb_012490_050 Hb_000834_030--Hb_012490_050 Hb_000707_020 Hb_000707_020 Hb_000834_030--Hb_000707_020 Hb_005463_140 Hb_005463_140 Hb_000834_030--Hb_005463_140 Hb_003777_210 Hb_003777_210 Hb_000834_030--Hb_003777_210 Hb_001284_030 Hb_001284_030 Hb_000834_030--Hb_001284_030 Hb_000042_200 Hb_000042_200 Hb_000834_030--Hb_000042_200 Hb_012490_050--Hb_005463_140 Hb_011644_030 Hb_011644_030 Hb_012490_050--Hb_011644_030 Hb_012490_050--Hb_000707_020 Hb_000817_030 Hb_000817_030 Hb_012490_050--Hb_000817_030 Hb_004659_060 Hb_004659_060 Hb_012490_050--Hb_004659_060 Hb_000302_280 Hb_000302_280 Hb_000707_020--Hb_000302_280 Hb_138585_040 Hb_138585_040 Hb_000707_020--Hb_138585_040 Hb_001005_080 Hb_001005_080 Hb_000707_020--Hb_001005_080 Hb_000049_050 Hb_000049_050 Hb_000707_020--Hb_000049_050 Hb_072922_020 Hb_072922_020 Hb_005463_140--Hb_072922_020 Hb_000224_140 Hb_000224_140 Hb_005463_140--Hb_000224_140 Hb_001155_040 Hb_001155_040 Hb_005463_140--Hb_001155_040 Hb_068056_030 Hb_068056_030 Hb_005463_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_005463_140--Hb_001512_080 Hb_005463_140--Hb_000302_280 Hb_002391_220 Hb_002391_220 Hb_003777_210--Hb_002391_220 Hb_000069_140 Hb_000069_140 Hb_003777_210--Hb_000069_140 Hb_003777_210--Hb_000042_200 Hb_000599_280 Hb_000599_280 Hb_003777_210--Hb_000599_280 Hb_000723_250 Hb_000723_250 Hb_003777_210--Hb_000723_250 Hb_000046_350 Hb_000046_350 Hb_001284_030--Hb_000046_350 Hb_002918_290 Hb_002918_290 Hb_001284_030--Hb_002918_290 Hb_001284_030--Hb_000042_200 Hb_033153_060 Hb_033153_060 Hb_001284_030--Hb_033153_060 Hb_001284_030--Hb_068056_030 Hb_161175_010 Hb_161175_010 Hb_001284_030--Hb_161175_010 Hb_000042_200--Hb_033153_060 Hb_000042_200--Hb_002918_290 Hb_001953_090 Hb_001953_090 Hb_000042_200--Hb_001953_090 Hb_000042_200--Hb_005463_140 Hb_004459_040 Hb_004459_040 Hb_000042_200--Hb_004459_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29591 0.642603 1.18837 4.61456 1.28558 3.83323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.05341 10.9435 4.98254 4.00438 3.53904

CAGE analysis