Hb_000723_250

Information

Type -
Description -
Location Contig723: 232970-234655
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12890g
description hypothetical protein
nr
ID KDP29131.1
description hypothetical protein JCGZ_16520 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55778: 232947-233552 , PASA_asmbl_55779: 233582-234183 , PASA_asmbl_55780: 235477-245335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_250 0.0 - - hypothetical protein JCGZ_16520 [Jatropha curcas]
2 Hb_000042_200 0.107793049 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
3 Hb_003777_210 0.11616616 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
4 Hb_001953_090 0.1229470281 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
5 Hb_000320_180 0.1264294701 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
6 Hb_000045_250 0.1284359493 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
7 Hb_002878_010 0.1302804209 - - -
8 Hb_000463_130 0.1387046924 - - unnamed protein product [Coffea canephora]
9 Hb_002809_130 0.1402555146 - - mads box protein, putative [Ricinus communis]
10 Hb_033153_060 0.1450191843 - - Transcription elongation factor, putative [Ricinus communis]
11 Hb_012251_010 0.1452400732 - - -
12 Hb_000599_280 0.1453357908 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
13 Hb_002687_170 0.1455312447 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
14 Hb_002391_220 0.1469559805 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
15 Hb_004007_180 0.1499355187 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
16 Hb_007416_020 0.1503306308 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
17 Hb_000270_720 0.1503348489 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
18 Hb_002918_290 0.1520929023 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
19 Hb_000365_080 0.1534088702 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
20 Hb_006452_040 0.1536876329 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]

Gene co-expression network

sample Hb_000723_250 Hb_000723_250 Hb_000042_200 Hb_000042_200 Hb_000723_250--Hb_000042_200 Hb_003777_210 Hb_003777_210 Hb_000723_250--Hb_003777_210 Hb_001953_090 Hb_001953_090 Hb_000723_250--Hb_001953_090 Hb_000320_180 Hb_000320_180 Hb_000723_250--Hb_000320_180 Hb_000045_250 Hb_000045_250 Hb_000723_250--Hb_000045_250 Hb_002878_010 Hb_002878_010 Hb_000723_250--Hb_002878_010 Hb_033153_060 Hb_033153_060 Hb_000042_200--Hb_033153_060 Hb_002918_290 Hb_002918_290 Hb_000042_200--Hb_002918_290 Hb_000042_200--Hb_001953_090 Hb_005463_140 Hb_005463_140 Hb_000042_200--Hb_005463_140 Hb_001284_030 Hb_001284_030 Hb_000042_200--Hb_001284_030 Hb_004459_040 Hb_004459_040 Hb_000042_200--Hb_004459_040 Hb_002391_220 Hb_002391_220 Hb_003777_210--Hb_002391_220 Hb_000834_030 Hb_000834_030 Hb_003777_210--Hb_000834_030 Hb_000069_140 Hb_000069_140 Hb_003777_210--Hb_000069_140 Hb_003777_210--Hb_000042_200 Hb_000599_280 Hb_000599_280 Hb_003777_210--Hb_000599_280 Hb_001953_090--Hb_002878_010 Hb_001953_090--Hb_002918_290 Hb_000322_140 Hb_000322_140 Hb_001953_090--Hb_000322_140 Hb_001842_040 Hb_001842_040 Hb_001953_090--Hb_001842_040 Hb_001953_090--Hb_001284_030 Hb_138585_050 Hb_138585_050 Hb_000320_180--Hb_138585_050 Hb_000320_180--Hb_004459_040 Hb_024714_050 Hb_024714_050 Hb_000320_180--Hb_024714_050 Hb_000320_180--Hb_000042_200 Hb_002687_170 Hb_002687_170 Hb_000320_180--Hb_002687_170 Hb_004846_090 Hb_004846_090 Hb_000320_180--Hb_004846_090 Hb_012251_010 Hb_012251_010 Hb_000045_250--Hb_012251_010 Hb_000203_020 Hb_000203_020 Hb_000045_250--Hb_000203_020 Hb_000134_070 Hb_000134_070 Hb_000045_250--Hb_000134_070 Hb_003226_210 Hb_003226_210 Hb_000045_250--Hb_003226_210 Hb_007416_020 Hb_007416_020 Hb_000045_250--Hb_007416_020 Hb_001882_070 Hb_001882_070 Hb_000045_250--Hb_001882_070 Hb_002878_010--Hb_000322_140 Hb_004336_050 Hb_004336_050 Hb_002878_010--Hb_004336_050 Hb_004374_140 Hb_004374_140 Hb_002878_010--Hb_004374_140 Hb_001461_010 Hb_001461_010 Hb_002878_010--Hb_001461_010 Hb_172706_030 Hb_172706_030 Hb_002878_010--Hb_172706_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.43589 1.94348 4.22943 15.7591 7.3483 12.9239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.3776 45.1806 11.6047 2.41279 13.1132

CAGE analysis