Hb_024714_050

Information

Type -
Description -
Location Contig24714: 27289-28780
Sequence    

Annotation

kegg
ID cic:CICLE_v100188992m
description hypothetical protein
nr
ID XP_006444298.1
description hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
swissprot
ID Q941I6
description DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana GN=PMS1 PE=1 SV=1
trembl
ID V4TB35
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100188992mg PE=4 SV=1
Gene Ontology
ID GO:0032300
description dna mismatch repair protein pms1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25694: 27618-28119 , PASA_asmbl_25695: 28146-28762 , PASA_asmbl_25696: 29359-29843
cDNA
(Sanger)
(ID:Location)		 014_P21.ab1: 29361-29786 , 018_L16.ab1: 29359-29843 , 023_O03.ab1: 29360-29795 , 033_F18.ab1: 29361-29843 , 049_H22.ab1: 29360-29795

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024714_050 0.0 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
2 Hb_000320_180 0.0980531867 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
3 Hb_004846_090 0.1176417084 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
4 Hb_003349_080 0.1251765797 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
5 Hb_000318_160 0.1255260694 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
6 Hb_003336_030 0.12745101 - - transcription factor, putative [Ricinus communis]
7 Hb_003050_280 0.1278056413 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
8 Hb_004125_040 0.1314895391 - - -
9 Hb_000272_140 0.1340487712 - - Protein bem46, putative [Ricinus communis]
10 Hb_004459_040 0.1365898308 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
11 Hb_138585_050 0.1389751877 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
12 Hb_002843_140 0.1395446683 - - hypothetical protein JCGZ_20933 [Jatropha curcas]
13 Hb_002687_170 0.1420067405 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
14 Hb_000445_490 0.1433127808 - - -
15 Hb_000042_200 0.1434220207 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
16 Hb_001491_010 0.1441125653 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
17 Hb_011671_390 0.1457093737 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
18 Hb_009158_020 0.1457905439 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
19 Hb_002918_290 0.1462029415 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
20 Hb_002391_220 0.1470833915 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]

Gene co-expression network

sample Hb_024714_050 Hb_024714_050 Hb_000320_180 Hb_000320_180 Hb_024714_050--Hb_000320_180 Hb_004846_090 Hb_004846_090 Hb_024714_050--Hb_004846_090 Hb_003349_080 Hb_003349_080 Hb_024714_050--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_024714_050--Hb_000318_160 Hb_003336_030 Hb_003336_030 Hb_024714_050--Hb_003336_030 Hb_003050_280 Hb_003050_280 Hb_024714_050--Hb_003050_280 Hb_138585_050 Hb_138585_050 Hb_000320_180--Hb_138585_050 Hb_004459_040 Hb_004459_040 Hb_000320_180--Hb_004459_040 Hb_000042_200 Hb_000042_200 Hb_000320_180--Hb_000042_200 Hb_002687_170 Hb_002687_170 Hb_000320_180--Hb_002687_170 Hb_000320_180--Hb_004846_090 Hb_000453_090 Hb_000453_090 Hb_004846_090--Hb_000453_090 Hb_011671_390 Hb_011671_390 Hb_004846_090--Hb_011671_390 Hb_004846_090--Hb_004459_040 Hb_001780_040 Hb_001780_040 Hb_004846_090--Hb_001780_040 Hb_000840_180 Hb_000840_180 Hb_004846_090--Hb_000840_180 Hb_028486_030 Hb_028486_030 Hb_004846_090--Hb_028486_030 Hb_003349_080--Hb_000318_160 Hb_000224_140 Hb_000224_140 Hb_003349_080--Hb_000224_140 Hb_003349_080--Hb_003050_280 Hb_068056_030 Hb_068056_030 Hb_003349_080--Hb_068056_030 Hb_000680_140 Hb_000680_140 Hb_003349_080--Hb_000680_140 Hb_002918_290 Hb_002918_290 Hb_003349_080--Hb_002918_290 Hb_000318_160--Hb_003050_280 Hb_000318_160--Hb_000224_140 Hb_000318_160--Hb_068056_030 Hb_000928_130 Hb_000928_130 Hb_000318_160--Hb_000928_130 Hb_000445_490 Hb_000445_490 Hb_000318_160--Hb_000445_490 Hb_003336_030--Hb_138585_050 Hb_003336_030--Hb_000320_180 Hb_000210_220 Hb_000210_220 Hb_003336_030--Hb_000210_220 Hb_000272_140 Hb_000272_140 Hb_003336_030--Hb_000272_140 Hb_000169_140 Hb_000169_140 Hb_003336_030--Hb_000169_140 Hb_004125_040 Hb_004125_040 Hb_003050_280--Hb_004125_040 Hb_003050_280--Hb_000224_140 Hb_002872_050 Hb_002872_050 Hb_003050_280--Hb_002872_050 Hb_007576_170 Hb_007576_170 Hb_003050_280--Hb_007576_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.56779 0.102097 2.67111 1.88304 1.50566 2.04497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.40513 8.20391 3.87341 0.637993 3.45883

CAGE analysis