Hb_000272_140

Information

Type -
Description -
Location Contig272: 164069-168326
Sequence    

Annotation

kegg
ID rcu:RCOM_0700910
description Protein bem46, putative
nr
ID XP_002523513.1
description Protein bem46, putative [Ricinus communis]
swissprot
ID Q5VST6
description Alpha/beta hydrolase domain-containing protein 17B OS=Homo sapiens GN=ABHD17B PE=2 SV=1
trembl
ID B9SBZ4
description Protein bem46, putative OS=Ricinus communis GN=RCOM_0700910 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta hydrolase domain-containing protein 17b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28477: 164126-167896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000272_140 0.0 - - Protein bem46, putative [Ricinus communis]
2 Hb_002878_010 0.1028390605 - - -
3 Hb_002918_290 0.1053485312 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
4 Hb_000705_290 0.1057224755 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
5 Hb_001953_090 0.1073874547 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
6 Hb_000042_200 0.1105245861 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
7 Hb_000322_140 0.11394725 - - hypothetical protein RCOM_1047200 [Ricinus communis]
8 Hb_068056_030 0.1216663646 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
9 Hb_000320_180 0.1243361599 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
10 Hb_003349_080 0.1265211759 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
11 Hb_003605_160 0.1271265451 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
12 Hb_001284_030 0.1296141456 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_008544_010 0.1309936373 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
14 Hb_000300_220 0.1312505605 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
15 Hb_033153_060 0.1316203183 - - Transcription elongation factor, putative [Ricinus communis]
16 Hb_001014_170 0.1328586755 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
17 Hb_000914_170 0.1334818502 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
18 Hb_024714_050 0.1340487712 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
19 Hb_003849_150 0.1343972594 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
20 Hb_001318_250 0.1345282801 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]

Gene co-expression network

sample Hb_000272_140 Hb_000272_140 Hb_002878_010 Hb_002878_010 Hb_000272_140--Hb_002878_010 Hb_002918_290 Hb_002918_290 Hb_000272_140--Hb_002918_290 Hb_000705_290 Hb_000705_290 Hb_000272_140--Hb_000705_290 Hb_001953_090 Hb_001953_090 Hb_000272_140--Hb_001953_090 Hb_000042_200 Hb_000042_200 Hb_000272_140--Hb_000042_200 Hb_000322_140 Hb_000322_140 Hb_000272_140--Hb_000322_140 Hb_002878_010--Hb_001953_090 Hb_002878_010--Hb_000322_140 Hb_004336_050 Hb_004336_050 Hb_002878_010--Hb_004336_050 Hb_004374_140 Hb_004374_140 Hb_002878_010--Hb_004374_140 Hb_001461_010 Hb_001461_010 Hb_002878_010--Hb_001461_010 Hb_172706_030 Hb_172706_030 Hb_002878_010--Hb_172706_030 Hb_068056_030 Hb_068056_030 Hb_002918_290--Hb_068056_030 Hb_001284_030 Hb_001284_030 Hb_002918_290--Hb_001284_030 Hb_002918_290--Hb_000042_200 Hb_000224_140 Hb_000224_140 Hb_002918_290--Hb_000224_140 Hb_033153_060 Hb_033153_060 Hb_002918_290--Hb_033153_060 Hb_004459_040 Hb_004459_040 Hb_002918_290--Hb_004459_040 Hb_161175_010 Hb_161175_010 Hb_000705_290--Hb_161175_010 Hb_006442_020 Hb_006442_020 Hb_000705_290--Hb_006442_020 Hb_001136_060 Hb_001136_060 Hb_000705_290--Hb_001136_060 Hb_000705_290--Hb_000042_200 Hb_000705_290--Hb_001284_030 Hb_001953_090--Hb_000042_200 Hb_001953_090--Hb_002918_290 Hb_001953_090--Hb_000322_140 Hb_001842_040 Hb_001842_040 Hb_001953_090--Hb_001842_040 Hb_001953_090--Hb_001284_030 Hb_000042_200--Hb_033153_060 Hb_005463_140 Hb_005463_140 Hb_000042_200--Hb_005463_140 Hb_000042_200--Hb_001284_030 Hb_000042_200--Hb_004459_040 Hb_000300_220 Hb_000300_220 Hb_000322_140--Hb_000300_220 Hb_004659_060 Hb_004659_060 Hb_000322_140--Hb_004659_060 Hb_000322_140--Hb_001461_010 Hb_000322_140--Hb_004374_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.42808 0.559766 2.65959 4.98567 1.4938 3.79433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.68311 7.96565 5.77225 0.977637 3.78488

CAGE analysis