Hb_068056_030

Information

Type -
Description -
Location Contig68056: 41173-46227
Sequence    

Annotation

kegg
ID rcu:RCOM_1460050
description ATP synthase epsilon chain, mitochondrial, putative (EC:3.6.3.14)
nr
ID XP_002517228.1
description ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
swissprot
ID Q06450
description ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2
trembl
ID B9RU09
description ATP synthase epsilon chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_1460050 PE=4 SV=1
Gene Ontology
ID GO:0000275
description atp synthase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53769: 41172-46205 , PASA_asmbl_53771: 44388-44544 , PASA_asmbl_53772: 42343-42459
cDNA
(Sanger)
(ID:Location)		 006_B09.ab1: 41233-46043 , 007_I04.ab1: 41233-46046 , 010_P23.ab1: 41237-46043 , 014_G18.ab1: 41206-46063 , 015_O03.ab1: 41172-46072 , 016_H23.ab1: 41243-46043 , 027_J20.ab1: 41206-46046 , 036_L04.ab1: 41172-46046 , 038_L19.ab1: 41172-46044

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068056_030 0.0 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
2 Hb_000224_140 0.0565193222 - - ribonuclease z, chloroplast, putative [Ricinus communis]
3 Hb_002918_290 0.0663047553 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
4 Hb_006569_100 0.0707243409 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
5 Hb_001512_080 0.0737327057 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
6 Hb_005463_140 0.0749888305 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
7 Hb_000417_260 0.0773525677 - - protein with unknown function [Ricinus communis]
8 Hb_000318_160 0.078594423 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
9 Hb_001776_160 0.0794453631 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
10 Hb_002742_090 0.0818083355 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
11 Hb_003349_080 0.0824551097 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
12 Hb_002110_200 0.0837566985 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_001314_040 0.0850839894 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
14 Hb_006831_120 0.0869036982 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
15 Hb_027654_050 0.0872729791 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
16 Hb_002000_140 0.0881635114 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
17 Hb_004459_040 0.088660971 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
18 Hb_072922_020 0.090517789 - - SNARE-like superfamily protein [Theobroma cacao]
19 Hb_000254_050 0.0913829231 - - hypothetical protein VITISV_010510 [Vitis vinifera]
20 Hb_000300_220 0.0917500276 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]

Gene co-expression network

sample Hb_068056_030 Hb_068056_030 Hb_000224_140 Hb_000224_140 Hb_068056_030--Hb_000224_140 Hb_002918_290 Hb_002918_290 Hb_068056_030--Hb_002918_290 Hb_006569_100 Hb_006569_100 Hb_068056_030--Hb_006569_100 Hb_001512_080 Hb_001512_080 Hb_068056_030--Hb_001512_080 Hb_005463_140 Hb_005463_140 Hb_068056_030--Hb_005463_140 Hb_000417_260 Hb_000417_260 Hb_068056_030--Hb_000417_260 Hb_000224_140--Hb_001512_080 Hb_001076_020 Hb_001076_020 Hb_000224_140--Hb_001076_020 Hb_003349_080 Hb_003349_080 Hb_000224_140--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_000224_140--Hb_000318_160 Hb_000224_140--Hb_005463_140 Hb_001284_030 Hb_001284_030 Hb_002918_290--Hb_001284_030 Hb_000042_200 Hb_000042_200 Hb_002918_290--Hb_000042_200 Hb_002918_290--Hb_000224_140 Hb_033153_060 Hb_033153_060 Hb_002918_290--Hb_033153_060 Hb_004459_040 Hb_004459_040 Hb_002918_290--Hb_004459_040 Hb_001314_040 Hb_001314_040 Hb_006569_100--Hb_001314_040 Hb_020419_020 Hb_020419_020 Hb_006569_100--Hb_020419_020 Hb_001519_030 Hb_001519_030 Hb_006569_100--Hb_001519_030 Hb_000069_550 Hb_000069_550 Hb_006569_100--Hb_000069_550 Hb_001008_090 Hb_001008_090 Hb_006569_100--Hb_001008_090 Hb_002110_200 Hb_002110_200 Hb_001512_080--Hb_002110_200 Hb_000254_050 Hb_000254_050 Hb_001512_080--Hb_000254_050 Hb_001085_120 Hb_001085_120 Hb_001512_080--Hb_001085_120 Hb_027654_050 Hb_027654_050 Hb_001512_080--Hb_027654_050 Hb_000453_120 Hb_000453_120 Hb_001512_080--Hb_000453_120 Hb_072922_020 Hb_072922_020 Hb_005463_140--Hb_072922_020 Hb_001155_040 Hb_001155_040 Hb_005463_140--Hb_001155_040 Hb_005463_140--Hb_001512_080 Hb_000302_280 Hb_000302_280 Hb_005463_140--Hb_000302_280 Hb_005278_040 Hb_005278_040 Hb_000417_260--Hb_005278_040 Hb_001005_080 Hb_001005_080 Hb_000417_260--Hb_001005_080 Hb_000384_120 Hb_000384_120 Hb_000417_260--Hb_000384_120 Hb_004672_010 Hb_004672_010 Hb_000417_260--Hb_004672_010 Hb_000417_260--Hb_001008_090 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.1723 14.7619 45.5106 77.5668 29.7458 49.8787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
133.461 186.032 139.238 44.5434 60.2815

CAGE analysis