Hb_020419_020

Information

Type -
Description -
Location Contig20419: 6480-9077
Sequence    

Annotation

kegg
ID brp:103864746
description calmodulin-7-like
nr
ID XP_003632230.1
description PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
swissprot
ID P62201
description Calmodulin OS=Lilium longiflorum PE=2 SV=2
trembl
ID G3MHB1
description Putative uncharacterized protein (Fragment) OS=Amblyomma maculatum PE=2 SV=1
Gene Ontology
ID GO:0005829
description calmodulin-7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20929: 6198-9163
cDNA
(Sanger)
(ID:Location)		 007_D13.ab1: 6267-9110 , 025_B06.ab1: 6241-9152 , 031_K02.ab1: 6355-9163 , 051_K15.ab1: 6263-9163

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020419_020 0.0 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
2 Hb_006569_100 0.0665238838 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
3 Hb_001314_040 0.0752506735 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
4 Hb_001008_090 0.0899462473 - - cytochrome C oxidase, putative [Ricinus communis]
5 Hb_004449_200 0.0904638072 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
6 Hb_005663_120 0.0946171115 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
7 Hb_068056_030 0.0947863525 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
8 Hb_001157_010 0.0953857308 - - deoxyhypusine synthase, putative [Ricinus communis]
9 Hb_007317_160 0.0976641938 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
10 Hb_000805_250 0.0977528638 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
11 Hb_005278_040 0.0986941779 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
12 Hb_050806_010 0.0987385218 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
13 Hb_006452_040 0.1035913403 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
14 Hb_000300_220 0.1039084924 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
15 Hb_032969_030 0.1040459983 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_000023_340 0.1070220459 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
17 Hb_000027_150 0.1080092812 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_000012_100 0.1087576447 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
19 Hb_000122_020 0.1087811724 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
20 Hb_006573_220 0.1095655998 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_020419_020 Hb_020419_020 Hb_006569_100 Hb_006569_100 Hb_020419_020--Hb_006569_100 Hb_001314_040 Hb_001314_040 Hb_020419_020--Hb_001314_040 Hb_001008_090 Hb_001008_090 Hb_020419_020--Hb_001008_090 Hb_004449_200 Hb_004449_200 Hb_020419_020--Hb_004449_200 Hb_005663_120 Hb_005663_120 Hb_020419_020--Hb_005663_120 Hb_068056_030 Hb_068056_030 Hb_020419_020--Hb_068056_030 Hb_006569_100--Hb_001314_040 Hb_006569_100--Hb_068056_030 Hb_001519_030 Hb_001519_030 Hb_006569_100--Hb_001519_030 Hb_000069_550 Hb_000069_550 Hb_006569_100--Hb_000069_550 Hb_006569_100--Hb_001008_090 Hb_001157_010 Hb_001157_010 Hb_001314_040--Hb_001157_010 Hb_000802_100 Hb_000802_100 Hb_001314_040--Hb_000802_100 Hb_000224_140 Hb_000224_140 Hb_001314_040--Hb_000224_140 Hb_001314_040--Hb_068056_030 Hb_005278_040 Hb_005278_040 Hb_001008_090--Hb_005278_040 Hb_000417_260 Hb_000417_260 Hb_001008_090--Hb_000417_260 Hb_004659_060 Hb_004659_060 Hb_001008_090--Hb_004659_060 Hb_000300_220 Hb_000300_220 Hb_001008_090--Hb_000300_220 Hb_183961_010 Hb_183961_010 Hb_001008_090--Hb_183961_010 Hb_000122_020 Hb_000122_020 Hb_004449_200--Hb_000122_020 Hb_002631_020 Hb_002631_020 Hb_004449_200--Hb_002631_020 Hb_007926_060 Hb_007926_060 Hb_004449_200--Hb_007926_060 Hb_001191_090 Hb_001191_090 Hb_004449_200--Hb_001191_090 Hb_000364_030 Hb_000364_030 Hb_004449_200--Hb_000364_030 Hb_001461_010 Hb_001461_010 Hb_004449_200--Hb_001461_010 Hb_000300_390 Hb_000300_390 Hb_005663_120--Hb_000300_390 Hb_012539_020 Hb_012539_020 Hb_005663_120--Hb_012539_020 Hb_002316_120 Hb_002316_120 Hb_005663_120--Hb_002316_120 Hb_032969_030 Hb_032969_030 Hb_005663_120--Hb_032969_030 Hb_005527_040 Hb_005527_040 Hb_005663_120--Hb_005527_040 Hb_000389_080 Hb_000389_080 Hb_005663_120--Hb_000389_080 Hb_068056_030--Hb_000224_140 Hb_002918_290 Hb_002918_290 Hb_068056_030--Hb_002918_290 Hb_001512_080 Hb_001512_080 Hb_068056_030--Hb_001512_080 Hb_005463_140 Hb_005463_140 Hb_068056_030--Hb_005463_140 Hb_068056_030--Hb_000417_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
258.653 75.949 316.16 535.816 180.674 380.667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
974.332 1396.48 1174.97 242.053 177.995

CAGE analysis