Hb_001005_080

Information

Type -
Description -
Location Contig1005: 77992-90827
Sequence    

Annotation

kegg
ID rcu:RCOM_1445040
description ubiquinol-cytochrome C reductase iron-sulfur subunit, putative (EC:1.10.2.2)
nr
ID XP_012067358.1
description PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
swissprot
ID P49727
description Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1
trembl
ID A0A067L0B8
description Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Jatropha curcas GN=JCGZ_26880 PE=4 SV=1
Gene Ontology
ID GO:0005743
description cytochrome b-c1 complex subunit rieske- mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00325: 86111-90741 , PASA_asmbl_00326: 88459-88784 , PASA_asmbl_00328: 89244-89561 , PASA_asmbl_00329: 86392-87149 , PASA_asmbl_00330: 76721-87996
cDNA
(Sanger)
(ID:Location)		 043_G21.ab1: 86098-90303 , 051_J19.ab1: 86392-87149

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_080 0.0 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
2 Hb_000417_260 0.0652020587 - - protein with unknown function [Ricinus communis]
3 Hb_001481_140 0.0677561912 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
4 Hb_001519_030 0.0715753869 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
5 Hb_007192_100 0.0786287424 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
6 Hb_152910_020 0.0790883261 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
7 Hb_005463_140 0.0817168579 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
8 Hb_005137_060 0.0820507807 - - -
9 Hb_005527_040 0.0860599558 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
10 Hb_002374_390 0.0866080078 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
11 Hb_029904_040 0.0889614234 - - putative aspartate aminotransferase protein, partial [Elaeis guineensis]
12 Hb_000389_080 0.0905434032 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
13 Hb_000384_120 0.0910015981 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
14 Hb_004672_010 0.0914323614 - - ecotropic viral integration site, putative [Ricinus communis]
15 Hb_004659_060 0.093708256 - - RAS-related GTP-binding family protein [Populus trichocarpa]
16 Hb_005656_100 0.0949278601 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005278_040 0.0960368029 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
18 Hb_000707_020 0.0979243053 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
19 Hb_033642_080 0.098424842 - - V-type proton ATPase subunit E [Hevea brasiliensis]
20 Hb_000122_020 0.0987170524 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001005_080 Hb_001005_080 Hb_000417_260 Hb_000417_260 Hb_001005_080--Hb_000417_260 Hb_001481_140 Hb_001481_140 Hb_001005_080--Hb_001481_140 Hb_001519_030 Hb_001519_030 Hb_001005_080--Hb_001519_030 Hb_007192_100 Hb_007192_100 Hb_001005_080--Hb_007192_100 Hb_152910_020 Hb_152910_020 Hb_001005_080--Hb_152910_020 Hb_005463_140 Hb_005463_140 Hb_001005_080--Hb_005463_140 Hb_005278_040 Hb_005278_040 Hb_000417_260--Hb_005278_040 Hb_000384_120 Hb_000384_120 Hb_000417_260--Hb_000384_120 Hb_004672_010 Hb_004672_010 Hb_000417_260--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_000417_260--Hb_001008_090 Hb_000417_260--Hb_001481_140 Hb_001481_140--Hb_001519_030 Hb_003462_120 Hb_003462_120 Hb_001481_140--Hb_003462_120 Hb_001481_140--Hb_004672_010 Hb_001481_140--Hb_001008_090 Hb_006569_100 Hb_006569_100 Hb_001519_030--Hb_006569_100 Hb_005527_040 Hb_005527_040 Hb_001519_030--Hb_005527_040 Hb_000817_030 Hb_000817_030 Hb_001519_030--Hb_000817_030 Hb_001904_090 Hb_001904_090 Hb_001519_030--Hb_001904_090 Hb_001172_120 Hb_001172_120 Hb_007192_100--Hb_001172_120 Hb_015807_100 Hb_015807_100 Hb_007192_100--Hb_015807_100 Hb_000115_230 Hb_000115_230 Hb_007192_100--Hb_000115_230 Hb_007192_100--Hb_152910_020 Hb_007192_100--Hb_000384_120 Hb_003185_050 Hb_003185_050 Hb_152910_020--Hb_003185_050 Hb_029904_040 Hb_029904_040 Hb_152910_020--Hb_029904_040 Hb_152910_020--Hb_000115_230 Hb_050806_010 Hb_050806_010 Hb_152910_020--Hb_050806_010 Hb_072922_020 Hb_072922_020 Hb_005463_140--Hb_072922_020 Hb_000224_140 Hb_000224_140 Hb_005463_140--Hb_000224_140 Hb_001155_040 Hb_001155_040 Hb_005463_140--Hb_001155_040 Hb_068056_030 Hb_068056_030 Hb_005463_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_005463_140--Hb_001512_080 Hb_000302_280 Hb_000302_280 Hb_005463_140--Hb_000302_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7608 12.7896 12.8838 33.7825 10.4106 19.9641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.512 84.2592 62.368 35.2407 17.0068

CAGE analysis