Hb_029904_040

Information

Type -
Description -
Location Contig29904: 23075-26520
Sequence    

Annotation

kegg
ID zma:100383812
description uncharacterized LOC100383812
nr
ID AEZ00883.1
description putative aspartate aminotransferase protein, partial [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID A0A0A9CY01
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0008483
description pyridoxal phosphate -dependent transferases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31265: 19998-26421 , PASA_asmbl_31266: 24006-24319 , PASA_asmbl_31267: 24660-24919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029904_040 0.0 - - putative aspartate aminotransferase protein, partial [Elaeis guineensis]
2 Hb_152910_020 0.0794400149 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
3 Hb_050806_010 0.0887872321 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
4 Hb_001005_080 0.0889614234 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
5 Hb_000389_080 0.0960100595 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
6 Hb_004449_200 0.0981210923 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
7 Hb_000364_030 0.0996264275 - - RNA binding protein, putative [Ricinus communis]
8 Hb_005527_040 0.1000228969 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
9 Hb_002603_060 0.1027359261 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
10 Hb_002631_020 0.1057504201 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
11 Hb_007304_070 0.1061971765 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
12 Hb_005663_120 0.1101504471 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
13 Hb_004659_060 0.1121040056 - - RAS-related GTP-binding family protein [Populus trichocarpa]
14 Hb_012539_020 0.112530237 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
15 Hb_001519_030 0.1128114059 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
16 Hb_000122_020 0.1148594379 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
17 Hb_002374_390 0.1149709088 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
18 Hb_000722_040 0.1158178858 - - -
19 Hb_003053_030 0.117929119 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
20 Hb_001155_040 0.1180012059 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]

Gene co-expression network

sample Hb_029904_040 Hb_029904_040 Hb_152910_020 Hb_152910_020 Hb_029904_040--Hb_152910_020 Hb_050806_010 Hb_050806_010 Hb_029904_040--Hb_050806_010 Hb_001005_080 Hb_001005_080 Hb_029904_040--Hb_001005_080 Hb_000389_080 Hb_000389_080 Hb_029904_040--Hb_000389_080 Hb_004449_200 Hb_004449_200 Hb_029904_040--Hb_004449_200 Hb_000364_030 Hb_000364_030 Hb_029904_040--Hb_000364_030 Hb_003185_050 Hb_003185_050 Hb_152910_020--Hb_003185_050 Hb_152910_020--Hb_001005_080 Hb_007192_100 Hb_007192_100 Hb_152910_020--Hb_007192_100 Hb_000115_230 Hb_000115_230 Hb_152910_020--Hb_000115_230 Hb_152910_020--Hb_050806_010 Hb_000027_150 Hb_000027_150 Hb_050806_010--Hb_000027_150 Hb_005663_120 Hb_005663_120 Hb_050806_010--Hb_005663_120 Hb_050806_010--Hb_007192_100 Hb_005527_040 Hb_005527_040 Hb_050806_010--Hb_005527_040 Hb_000417_260 Hb_000417_260 Hb_001005_080--Hb_000417_260 Hb_001481_140 Hb_001481_140 Hb_001005_080--Hb_001481_140 Hb_001519_030 Hb_001519_030 Hb_001005_080--Hb_001519_030 Hb_001005_080--Hb_007192_100 Hb_005463_140 Hb_005463_140 Hb_001005_080--Hb_005463_140 Hb_012539_020 Hb_012539_020 Hb_000389_080--Hb_012539_020 Hb_001780_050 Hb_001780_050 Hb_000389_080--Hb_001780_050 Hb_000163_130 Hb_000163_130 Hb_000389_080--Hb_000163_130 Hb_000905_180 Hb_000905_180 Hb_000389_080--Hb_000905_180 Hb_001155_040 Hb_001155_040 Hb_000389_080--Hb_001155_040 Hb_003053_030 Hb_003053_030 Hb_000389_080--Hb_003053_030 Hb_000122_020 Hb_000122_020 Hb_004449_200--Hb_000122_020 Hb_002631_020 Hb_002631_020 Hb_004449_200--Hb_002631_020 Hb_007926_060 Hb_007926_060 Hb_004449_200--Hb_007926_060 Hb_001191_090 Hb_001191_090 Hb_004449_200--Hb_001191_090 Hb_004449_200--Hb_000364_030 Hb_001461_010 Hb_001461_010 Hb_004449_200--Hb_001461_010 Hb_000364_030--Hb_003053_030 Hb_002374_390 Hb_002374_390 Hb_000364_030--Hb_002374_390 Hb_000181_300 Hb_000181_300 Hb_000364_030--Hb_000181_300 Hb_000364_030--Hb_001191_090 Hb_148200_010 Hb_148200_010 Hb_000364_030--Hb_148200_010 Hb_011644_030 Hb_011644_030 Hb_000364_030--Hb_011644_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.9872 5.677 2.48561 14.169 3.5145 9.25149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.8924 33.7723 21.3895 9.65248 5.1573

CAGE analysis