Hb_000705_290

Information

Type -
Description -
Location Contig705: 156651-159176
Sequence    

Annotation

kegg
ID rcu:RCOM_0732630
description C-4 methyl sterol oxidase, putative (EC:1.14.13.72)
nr
ID XP_002520505.1
description C-4 methyl sterol oxidase, putative [Ricinus communis]
swissprot
ID Q8VWZ8
description Methylsterol monooxygenase 2-2 OS=Arabidopsis thaliana GN=SMO2-2 PE=2 SV=1
trembl
ID B9S3D6
description C-4 methyl sterol oxidase, putative OS=Ricinus communis GN=RCOM_0732630 PE=4 SV=1
Gene Ontology
ID GO:0016021
description methylsterol monooxygenase 2-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55089: 156617-158898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_290 0.0 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
2 Hb_161175_010 0.0861583398 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
3 Hb_006442_020 0.0976610633 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
4 Hb_001136_060 0.1052895692 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
5 Hb_000272_140 0.1057224755 - - Protein bem46, putative [Ricinus communis]
6 Hb_000042_200 0.1060793804 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
7 Hb_001284_030 0.1063496509 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
8 Hb_000318_160 0.1127300387 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
9 Hb_068056_030 0.1132840024 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
10 Hb_002918_290 0.1172590384 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
11 Hb_000096_150 0.1223551217 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
12 Hb_003349_080 0.1240945958 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
13 Hb_019113_020 0.12438791 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
14 Hb_000300_220 0.1267451995 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
15 Hb_003050_250 0.1278951789 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
16 Hb_000056_070 0.1293306731 - - -
17 Hb_000322_140 0.1294993049 - - hypothetical protein RCOM_1047200 [Ricinus communis]
18 Hb_000125_210 0.1298927981 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
19 Hb_000445_490 0.132713371 - - -
20 Hb_001953_090 0.1331584734 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000705_290 Hb_000705_290 Hb_161175_010 Hb_161175_010 Hb_000705_290--Hb_161175_010 Hb_006442_020 Hb_006442_020 Hb_000705_290--Hb_006442_020 Hb_001136_060 Hb_001136_060 Hb_000705_290--Hb_001136_060 Hb_000272_140 Hb_000272_140 Hb_000705_290--Hb_000272_140 Hb_000042_200 Hb_000042_200 Hb_000705_290--Hb_000042_200 Hb_001284_030 Hb_001284_030 Hb_000705_290--Hb_001284_030 Hb_000125_210 Hb_000125_210 Hb_161175_010--Hb_000125_210 Hb_000175_030 Hb_000175_030 Hb_161175_010--Hb_000175_030 Hb_019113_020 Hb_019113_020 Hb_161175_010--Hb_019113_020 Hb_003849_150 Hb_003849_150 Hb_161175_010--Hb_003849_150 Hb_000673_020 Hb_000673_020 Hb_161175_010--Hb_000673_020 Hb_000983_040 Hb_000983_040 Hb_006442_020--Hb_000983_040 Hb_000617_200 Hb_000617_200 Hb_006442_020--Hb_000617_200 Hb_006442_020--Hb_161175_010 Hb_002221_070 Hb_002221_070 Hb_006442_020--Hb_002221_070 Hb_011249_020 Hb_011249_020 Hb_006442_020--Hb_011249_020 Hb_001136_060--Hb_000042_200 Hb_000834_030 Hb_000834_030 Hb_001136_060--Hb_000834_030 Hb_000445_490 Hb_000445_490 Hb_001136_060--Hb_000445_490 Hb_033153_060 Hb_033153_060 Hb_001136_060--Hb_033153_060 Hb_003349_080 Hb_003349_080 Hb_001136_060--Hb_003349_080 Hb_002878_010 Hb_002878_010 Hb_000272_140--Hb_002878_010 Hb_002918_290 Hb_002918_290 Hb_000272_140--Hb_002918_290 Hb_001953_090 Hb_001953_090 Hb_000272_140--Hb_001953_090 Hb_000272_140--Hb_000042_200 Hb_000322_140 Hb_000322_140 Hb_000272_140--Hb_000322_140 Hb_000042_200--Hb_033153_060 Hb_000042_200--Hb_002918_290 Hb_000042_200--Hb_001953_090 Hb_005463_140 Hb_005463_140 Hb_000042_200--Hb_005463_140 Hb_000042_200--Hb_001284_030 Hb_004459_040 Hb_004459_040 Hb_000042_200--Hb_004459_040 Hb_000046_350 Hb_000046_350 Hb_001284_030--Hb_000046_350 Hb_001284_030--Hb_002918_290 Hb_001284_030--Hb_033153_060 Hb_068056_030 Hb_068056_030 Hb_001284_030--Hb_068056_030 Hb_001284_030--Hb_161175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.19125 1.03247 5.25058 14.4251 2.8907 6.98841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7567 22.5388 17.6166 5.96138 15.4374

CAGE analysis