Hb_011249_020

Information

Type -
Description -
Location Contig11249: 24921-33352
Sequence    

Annotation

kegg
ID rcu:RCOM_0271960
description clathrin assembly protein, putative (EC:1.3.1.74)
nr
ID XP_012081185.1
description PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
swissprot
ID Q9LHS0
description Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1
trembl
ID A0A067K5G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17025 PE=4 SV=1
Gene Ontology
ID GO:0005886
description clathrin assembly protein at5g35200

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03848: 25993-33336 , PASA_asmbl_03849: 27326-27455 , PASA_asmbl_03850: 29149-29927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011249_020 0.0 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
2 Hb_001307_030 0.0767313463 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
3 Hb_012244_010 0.0831250665 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
4 Hb_000297_120 0.0966403857 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
5 Hb_000240_030 0.0978576753 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000649_140 0.0986915176 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
7 Hb_006683_070 0.1012344912 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
8 Hb_001953_080 0.1015874559 - - pseudouridine synthase family protein, partial [Manihot esculenta]
9 Hb_008566_030 0.1017366212 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
10 Hb_002392_010 0.1017887793 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
11 Hb_185255_010 0.1060298116 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
12 Hb_025098_010 0.1069521613 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_000329_210 0.1103981158 - - Golgi snare 12 isoform 1 [Theobroma cacao]
14 Hb_003020_260 0.1110788467 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
15 Hb_032920_070 0.1117324354 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
16 Hb_003086_080 0.1142475366 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
17 Hb_001269_190 0.1153644127 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
18 Hb_066842_010 0.1159659092 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
19 Hb_004257_010 0.1162123141 - - CMP-sialic acid transporter, putative [Ricinus communis]
20 Hb_003126_070 0.1182030248 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_011249_020 Hb_011249_020 Hb_001307_030 Hb_001307_030 Hb_011249_020--Hb_001307_030 Hb_012244_010 Hb_012244_010 Hb_011249_020--Hb_012244_010 Hb_000297_120 Hb_000297_120 Hb_011249_020--Hb_000297_120 Hb_000240_030 Hb_000240_030 Hb_011249_020--Hb_000240_030 Hb_000649_140 Hb_000649_140 Hb_011249_020--Hb_000649_140 Hb_006683_070 Hb_006683_070 Hb_011249_020--Hb_006683_070 Hb_025098_010 Hb_025098_010 Hb_001307_030--Hb_025098_010 Hb_008566_030 Hb_008566_030 Hb_001307_030--Hb_008566_030 Hb_185255_010 Hb_185255_010 Hb_001307_030--Hb_185255_010 Hb_001307_030--Hb_000297_120 Hb_000329_210 Hb_000329_210 Hb_001307_030--Hb_000329_210 Hb_002392_010 Hb_002392_010 Hb_012244_010--Hb_002392_010 Hb_004257_010 Hb_004257_010 Hb_012244_010--Hb_004257_010 Hb_001153_120 Hb_001153_120 Hb_012244_010--Hb_001153_120 Hb_180343_010 Hb_180343_010 Hb_012244_010--Hb_180343_010 Hb_012244_010--Hb_000240_030 Hb_032920_070 Hb_032920_070 Hb_000297_120--Hb_032920_070 Hb_000185_220 Hb_000185_220 Hb_000297_120--Hb_000185_220 Hb_000297_120--Hb_006683_070 Hb_006059_010 Hb_006059_010 Hb_000297_120--Hb_006059_010 Hb_002660_170 Hb_002660_170 Hb_000297_120--Hb_002660_170 Hb_000590_120 Hb_000590_120 Hb_000240_030--Hb_000590_120 Hb_066842_010 Hb_066842_010 Hb_000240_030--Hb_066842_010 Hb_000240_030--Hb_006683_070 Hb_000240_030--Hb_002392_010 Hb_002110_100 Hb_002110_100 Hb_000240_030--Hb_002110_100 Hb_003106_100 Hb_003106_100 Hb_000649_140--Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_000649_140--Hb_002876_020 Hb_000700_040 Hb_000700_040 Hb_000649_140--Hb_000700_040 Hb_000649_140--Hb_001307_030 Hb_000428_060 Hb_000428_060 Hb_000649_140--Hb_000428_060 Hb_006683_070--Hb_185255_010 Hb_015934_120 Hb_015934_120 Hb_006683_070--Hb_015934_120 Hb_001269_190 Hb_001269_190 Hb_006683_070--Hb_001269_190 Hb_006683_070--Hb_025098_010 Hb_005800_030 Hb_005800_030 Hb_006683_070--Hb_005800_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.51827 4.7998 11.6513 32.9356 5.75069 9.03293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2126 24.2288 21.5819 15.8385 33.5091

CAGE analysis