Hb_001153_120

Information

Type -
Description -
Location Contig1153: 68880-70825
Sequence    

Annotation

kegg
ID rcu:RCOM_1683000
description NAD dependent epimerase/dehydratase, putative
nr
ID XP_012087027.1
description PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
swissprot
ID Q9LQ04
description Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana GN=NRS/ER PE=1 SV=1
trembl
ID A0A067JZU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20686 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable rhamnose biosynthetic enzyme 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04611: 69029-70744
cDNA
(Sanger)
(ID:Location)		 021_D12.ab1: 69148-70178

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_120 0.0 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
2 Hb_012244_010 0.10613579 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
3 Hb_001059_150 0.1159762103 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
4 Hb_002045_060 0.1168846457 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
5 Hb_000377_150 0.1169884762 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
6 Hb_000428_060 0.1180636347 - - malate dehydrogenase, putative [Ricinus communis]
7 Hb_011861_100 0.1250455851 - - amino acid transporter, putative [Ricinus communis]
8 Hb_021409_080 0.126136972 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
9 Hb_001004_150 0.1272001209 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
10 Hb_005098_030 0.1279613881 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
11 Hb_003360_040 0.1374950543 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
12 Hb_006573_290 0.1386689805 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
13 Hb_000310_100 0.1398924558 - - conserved hypothetical protein [Ricinus communis]
14 Hb_025466_010 0.1399878214 - - unnamed protein product [Vitis vinifera]
15 Hb_000032_370 0.1404749954 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
16 Hb_180343_010 0.1411486319 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
17 Hb_028049_010 0.1423869599 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
18 Hb_007441_080 0.1451843978 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
19 Hb_000215_280 0.1461775221 - - Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative [Ricinus communis]
20 Hb_002110_100 0.1479728494 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001153_120 Hb_001153_120 Hb_012244_010 Hb_012244_010 Hb_001153_120--Hb_012244_010 Hb_001059_150 Hb_001059_150 Hb_001153_120--Hb_001059_150 Hb_002045_060 Hb_002045_060 Hb_001153_120--Hb_002045_060 Hb_000377_150 Hb_000377_150 Hb_001153_120--Hb_000377_150 Hb_000428_060 Hb_000428_060 Hb_001153_120--Hb_000428_060 Hb_011861_100 Hb_011861_100 Hb_001153_120--Hb_011861_100 Hb_011249_020 Hb_011249_020 Hb_012244_010--Hb_011249_020 Hb_002392_010 Hb_002392_010 Hb_012244_010--Hb_002392_010 Hb_004257_010 Hb_004257_010 Hb_012244_010--Hb_004257_010 Hb_180343_010 Hb_180343_010 Hb_012244_010--Hb_180343_010 Hb_000240_030 Hb_000240_030 Hb_012244_010--Hb_000240_030 Hb_011671_460 Hb_011671_460 Hb_001059_150--Hb_011671_460 Hb_000934_190 Hb_000934_190 Hb_001059_150--Hb_000934_190 Hb_001059_150--Hb_002045_060 Hb_001059_150--Hb_000377_150 Hb_000419_070 Hb_000419_070 Hb_001059_150--Hb_000419_070 Hb_005276_040 Hb_005276_040 Hb_002045_060--Hb_005276_040 Hb_001892_070 Hb_001892_070 Hb_002045_060--Hb_001892_070 Hb_004123_020 Hb_004123_020 Hb_002045_060--Hb_004123_020 Hb_000032_370 Hb_000032_370 Hb_002045_060--Hb_000032_370 Hb_002045_060--Hb_000428_060 Hb_004317_030 Hb_004317_030 Hb_002045_060--Hb_004317_030 Hb_000457_290 Hb_000457_290 Hb_000377_150--Hb_000457_290 Hb_002503_020 Hb_002503_020 Hb_000377_150--Hb_002503_020 Hb_000377_150--Hb_000428_060 Hb_000615_050 Hb_000615_050 Hb_000377_150--Hb_000615_050 Hb_161175_010 Hb_161175_010 Hb_000377_150--Hb_161175_010 Hb_003106_100 Hb_003106_100 Hb_000428_060--Hb_003106_100 Hb_001123_160 Hb_001123_160 Hb_000428_060--Hb_001123_160 Hb_000428_060--Hb_005276_040 Hb_002876_020 Hb_002876_020 Hb_000428_060--Hb_002876_020 Hb_000428_060--Hb_180343_010 Hb_000252_100 Hb_000252_100 Hb_011861_100--Hb_000252_100 Hb_003305_040 Hb_003305_040 Hb_011861_100--Hb_003305_040 Hb_000215_280 Hb_000215_280 Hb_011861_100--Hb_000215_280 Hb_000505_150 Hb_000505_150 Hb_011861_100--Hb_000505_150 Hb_000454_090 Hb_000454_090 Hb_011861_100--Hb_000454_090 Hb_007386_040 Hb_007386_040 Hb_011861_100--Hb_007386_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8719 14.9051 54.5119 89.1169 7.06415 8.90743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.6863 56.7555 98.9295 41.3989 66.17

CAGE analysis