Hb_001059_150

Information

Type -
Description -
Location Contig1059: 144296-146020
Sequence    

Annotation

kegg
ID rcu:RCOM_1096010
description ubiquitin-protein ligase, putative
nr
ID XP_012091483.1
description PREDICTED: importin subunit alpha-5 [Jatropha curcas]
swissprot
ID O22193
description U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3
trembl
ID A0A067JDP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21349 PE=4 SV=1
Gene Ontology
ID GO:0005515
description vacuolar protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01949: 144186-146225
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_150 0.0 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
2 Hb_001153_120 0.1159762103 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
3 Hb_011671_460 0.1248409102 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
4 Hb_000934_190 0.1275097869 - - SER/ARG-rich protein 34A [Theobroma cacao]
5 Hb_002045_060 0.1307753691 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
6 Hb_000377_150 0.1316766248 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
7 Hb_000419_070 0.1323319123 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
8 Hb_012244_010 0.1341591908 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
9 Hb_000428_060 0.1363000435 - - malate dehydrogenase, putative [Ricinus communis]
10 Hb_003360_040 0.1377633755 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
11 Hb_001892_070 0.1402495653 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
12 Hb_005098_030 0.1404850537 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
13 Hb_004225_080 0.142972118 - - -
14 Hb_000853_190 0.146237331 - - mitochondrial carrier protein, putative [Ricinus communis]
15 Hb_003622_040 0.1479439309 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
16 Hb_000096_150 0.1485795219 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
17 Hb_006153_040 0.149172192 - - hypothetical protein PRUPE_ppa014788mg [Prunus persica]
18 Hb_000457_290 0.1509472091 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
19 Hb_003622_030 0.1516528556 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
20 Hb_000340_310 0.1518516371 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]

Gene co-expression network

sample Hb_001059_150 Hb_001059_150 Hb_001153_120 Hb_001153_120 Hb_001059_150--Hb_001153_120 Hb_011671_460 Hb_011671_460 Hb_001059_150--Hb_011671_460 Hb_000934_190 Hb_000934_190 Hb_001059_150--Hb_000934_190 Hb_002045_060 Hb_002045_060 Hb_001059_150--Hb_002045_060 Hb_000377_150 Hb_000377_150 Hb_001059_150--Hb_000377_150 Hb_000419_070 Hb_000419_070 Hb_001059_150--Hb_000419_070 Hb_012244_010 Hb_012244_010 Hb_001153_120--Hb_012244_010 Hb_001153_120--Hb_002045_060 Hb_001153_120--Hb_000377_150 Hb_000428_060 Hb_000428_060 Hb_001153_120--Hb_000428_060 Hb_011861_100 Hb_011861_100 Hb_001153_120--Hb_011861_100 Hb_011671_460--Hb_000934_190 Hb_011671_450 Hb_011671_450 Hb_011671_460--Hb_011671_450 Hb_000096_150 Hb_000096_150 Hb_011671_460--Hb_000096_150 Hb_000673_020 Hb_000673_020 Hb_011671_460--Hb_000673_020 Hb_000125_210 Hb_000125_210 Hb_011671_460--Hb_000125_210 Hb_003622_040 Hb_003622_040 Hb_011671_460--Hb_003622_040 Hb_000934_190--Hb_003622_040 Hb_000934_190--Hb_000673_020 Hb_005098_030 Hb_005098_030 Hb_000934_190--Hb_005098_030 Hb_008232_010 Hb_008232_010 Hb_000934_190--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000934_190--Hb_000982_080 Hb_003462_120 Hb_003462_120 Hb_000934_190--Hb_003462_120 Hb_005276_040 Hb_005276_040 Hb_002045_060--Hb_005276_040 Hb_001892_070 Hb_001892_070 Hb_002045_060--Hb_001892_070 Hb_004123_020 Hb_004123_020 Hb_002045_060--Hb_004123_020 Hb_000032_370 Hb_000032_370 Hb_002045_060--Hb_000032_370 Hb_002045_060--Hb_000428_060 Hb_004317_030 Hb_004317_030 Hb_002045_060--Hb_004317_030 Hb_000457_290 Hb_000457_290 Hb_000377_150--Hb_000457_290 Hb_002503_020 Hb_002503_020 Hb_000377_150--Hb_002503_020 Hb_000377_150--Hb_000428_060 Hb_000615_050 Hb_000615_050 Hb_000377_150--Hb_000615_050 Hb_161175_010 Hb_161175_010 Hb_000377_150--Hb_161175_010 Hb_001329_150 Hb_001329_150 Hb_000419_070--Hb_001329_150 Hb_001053_140 Hb_001053_140 Hb_000419_070--Hb_001053_140 Hb_011485_020 Hb_011485_020 Hb_000419_070--Hb_011485_020 Hb_011512_040 Hb_011512_040 Hb_000419_070--Hb_011512_040 Hb_010883_050 Hb_010883_050 Hb_000419_070--Hb_010883_050 Hb_002303_060 Hb_002303_060 Hb_000419_070--Hb_002303_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.97446 1.38861 11.1967 11.3949 2.71968 1.80983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7293 14.7503 20.096 10.9116 14.058

CAGE analysis