Hb_011671_450

Information

Type -
Description -
Location Contig11671: 348925-351881
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05192: 349160-349319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_450 0.0 - - -
2 Hb_000922_390 0.0849377552 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
3 Hb_005098_030 0.1041069496 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
4 Hb_011671_460 0.10529242 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
5 Hb_000820_090 0.111756306 - - -
6 Hb_004679_050 0.1136911788 - - galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
7 Hb_001811_030 0.1144229569 - - Beta-ureidopropionase, putative [Ricinus communis]
8 Hb_000934_190 0.1182379032 - - SER/ARG-rich protein 34A [Theobroma cacao]
9 Hb_000165_160 0.1191159827 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
10 Hb_001507_040 0.119305987 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000108_070 0.1201853685 - - alpha-tubulin 1 [Hevea brasiliensis]
12 Hb_000291_080 0.1256219122 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
13 Hb_008616_070 0.1259033362 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
14 Hb_005488_200 0.1261277272 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
15 Hb_000538_070 0.1269348727 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
16 Hb_006162_010 0.1274682763 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
17 Hb_009193_030 0.1292572377 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
18 Hb_008725_170 0.1296447238 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
19 Hb_000982_080 0.1297393416 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
20 Hb_004079_030 0.1297887528 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011671_450 Hb_011671_450 Hb_000922_390 Hb_000922_390 Hb_011671_450--Hb_000922_390 Hb_005098_030 Hb_005098_030 Hb_011671_450--Hb_005098_030 Hb_011671_460 Hb_011671_460 Hb_011671_450--Hb_011671_460 Hb_000820_090 Hb_000820_090 Hb_011671_450--Hb_000820_090 Hb_004679_050 Hb_004679_050 Hb_011671_450--Hb_004679_050 Hb_001811_030 Hb_001811_030 Hb_011671_450--Hb_001811_030 Hb_000922_390--Hb_001811_030 Hb_093458_050 Hb_093458_050 Hb_000922_390--Hb_093458_050 Hb_009193_030 Hb_009193_030 Hb_000922_390--Hb_009193_030 Hb_002600_040 Hb_002600_040 Hb_000922_390--Hb_002600_040 Hb_000922_390--Hb_000820_090 Hb_000934_190 Hb_000934_190 Hb_005098_030--Hb_000934_190 Hb_005098_030--Hb_004679_050 Hb_002119_130 Hb_002119_130 Hb_005098_030--Hb_002119_130 Hb_017131_010 Hb_017131_010 Hb_005098_030--Hb_017131_010 Hb_003622_040 Hb_003622_040 Hb_005098_030--Hb_003622_040 Hb_011671_460--Hb_000934_190 Hb_000096_150 Hb_000096_150 Hb_011671_460--Hb_000096_150 Hb_000673_020 Hb_000673_020 Hb_011671_460--Hb_000673_020 Hb_000125_210 Hb_000125_210 Hb_011671_460--Hb_000125_210 Hb_011671_460--Hb_003622_040 Hb_000291_080 Hb_000291_080 Hb_000820_090--Hb_000291_080 Hb_005488_200 Hb_005488_200 Hb_000820_090--Hb_005488_200 Hb_008232_010 Hb_008232_010 Hb_000820_090--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000820_090--Hb_000982_080 Hb_002111_040 Hb_002111_040 Hb_000820_090--Hb_002111_040 Hb_004672_010 Hb_004672_010 Hb_000820_090--Hb_004672_010 Hb_056753_010 Hb_056753_010 Hb_004679_050--Hb_056753_010 Hb_000731_260 Hb_000731_260 Hb_004679_050--Hb_000731_260 Hb_008616_070 Hb_008616_070 Hb_004679_050--Hb_008616_070 Hb_002799_040 Hb_002799_040 Hb_004679_050--Hb_002799_040 Hb_001014_040 Hb_001014_040 Hb_001811_030--Hb_001014_040 Hb_004079_030 Hb_004079_030 Hb_001811_030--Hb_004079_030 Hb_001507_040 Hb_001507_040 Hb_001811_030--Hb_001507_040 Hb_000445_040 Hb_000445_040 Hb_001811_030--Hb_000445_040 Hb_001811_030--Hb_008616_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.495282 0.268285 0.625077 1.07791 0.614677 0.351211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07871 0.942962 2.30624 1.22269 0.839645

CAGE analysis