Hb_056753_010

Information

Type -
Description -
Location Contig56753: 5-658
Sequence    

Annotation

kegg
ID csv:101225169
description L-galactono-1,4-lactone dehydrogenase, mitochondrial-like
nr
ID XP_012085978.1
description PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID O47881
description L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Brassica oleracea PE=1 SV=1
trembl
ID A0A067JTX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22469 PE=4 SV=1
Gene Ontology
ID GO:0009536
description l-galactono- -lactone mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49178: 2-673
cDNA
(Sanger)
(ID:Location)		 028_A19.ab1: 18-673

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056753_010 0.0 - - PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_004679_050 0.0799100614 - - galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
3 Hb_000789_220 0.1113187058 - - phosphofructokinase [Hevea brasiliensis]
4 Hb_001507_040 0.120148225 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002411_050 0.1240924504 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
6 Hb_002799_040 0.1251915647 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Vitis vinifera]
7 Hb_000731_260 0.1256692601 - - hypothetical protein RCOM_0905090 [Ricinus communis]
8 Hb_004785_140 0.1323955491 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
9 Hb_008616_070 0.1325740986 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
10 Hb_000165_160 0.1340963662 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
11 Hb_001811_030 0.1385780674 - - Beta-ureidopropionase, putative [Ricinus communis]
12 Hb_000592_020 0.1391410075 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_020805_130 0.140408854 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_000445_040 0.1404345458 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
15 Hb_000367_260 0.1405901568 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
16 Hb_000020_120 0.1431491928 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
17 Hb_000108_070 0.1439843635 - - alpha-tubulin 1 [Hevea brasiliensis]
18 Hb_004079_030 0.1441486869 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
19 Hb_001504_330 0.1447963079 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
20 Hb_005098_030 0.1448567078 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_056753_010 Hb_056753_010 Hb_004679_050 Hb_004679_050 Hb_056753_010--Hb_004679_050 Hb_000789_220 Hb_000789_220 Hb_056753_010--Hb_000789_220 Hb_001507_040 Hb_001507_040 Hb_056753_010--Hb_001507_040 Hb_002411_050 Hb_002411_050 Hb_056753_010--Hb_002411_050 Hb_002799_040 Hb_002799_040 Hb_056753_010--Hb_002799_040 Hb_000731_260 Hb_000731_260 Hb_056753_010--Hb_000731_260 Hb_005098_030 Hb_005098_030 Hb_004679_050--Hb_005098_030 Hb_004679_050--Hb_000731_260 Hb_008616_070 Hb_008616_070 Hb_004679_050--Hb_008616_070 Hb_011671_450 Hb_011671_450 Hb_004679_050--Hb_011671_450 Hb_004679_050--Hb_002799_040 Hb_004705_120 Hb_004705_120 Hb_000789_220--Hb_004705_120 Hb_001314_020 Hb_001314_020 Hb_000789_220--Hb_001314_020 Hb_010174_060 Hb_010174_060 Hb_000789_220--Hb_010174_060 Hb_003687_240 Hb_003687_240 Hb_000789_220--Hb_003687_240 Hb_000789_220--Hb_008616_070 Hb_020805_130 Hb_020805_130 Hb_001507_040--Hb_020805_130 Hb_001507_040--Hb_008616_070 Hb_002660_070 Hb_002660_070 Hb_001507_040--Hb_002660_070 Hb_000445_040 Hb_000445_040 Hb_001507_040--Hb_000445_040 Hb_000165_160 Hb_000165_160 Hb_001507_040--Hb_000165_160 Hb_006615_020 Hb_006615_020 Hb_001507_040--Hb_006615_020 Hb_000977_110 Hb_000977_110 Hb_002411_050--Hb_000977_110 Hb_002411_050--Hb_004679_050 Hb_001486_180 Hb_001486_180 Hb_002411_050--Hb_001486_180 Hb_029584_050 Hb_029584_050 Hb_002411_050--Hb_029584_050 Hb_002411_050--Hb_008616_070 Hb_001504_330 Hb_001504_330 Hb_002799_040--Hb_001504_330 Hb_000393_020 Hb_000393_020 Hb_002799_040--Hb_000393_020 Hb_031910_020 Hb_031910_020 Hb_002799_040--Hb_031910_020 Hb_002119_130 Hb_002119_130 Hb_002799_040--Hb_002119_130 Hb_002799_040--Hb_001507_040 Hb_000603_080 Hb_000603_080 Hb_002799_040--Hb_000603_080 Hb_000731_260--Hb_004705_120 Hb_000108_070 Hb_000108_070 Hb_000731_260--Hb_000108_070 Hb_001080_280 Hb_001080_280 Hb_000731_260--Hb_001080_280 Hb_000521_130 Hb_000521_130 Hb_000731_260--Hb_000521_130 Hb_148113_010 Hb_148113_010 Hb_000731_260--Hb_148113_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4503 19.5065 11.7699 16.6166 9.41391 12.5481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0851 16.9391 69.8676 27.6846 20.5816

CAGE analysis