Hb_001080_280

Information

Type -
Description -
Location Contig1080: 250019-250918
Sequence    

Annotation

kegg
ID rcu:RCOM_0557310
description hypothetical protein
nr
ID XP_012092223.1
description PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21918 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02443: 249572-251017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_280 0.0 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
2 Hb_004705_120 0.0935721847 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001519_030 0.0938541522 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
4 Hb_000635_150 0.1008381385 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
5 Hb_000123_170 0.1097909743 - - Rab3 [Hevea brasiliensis]
6 Hb_001105_070 0.1098076361 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
7 Hb_011953_020 0.1111622939 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
8 Hb_000731_260 0.1125835827 - - hypothetical protein RCOM_0905090 [Ricinus communis]
9 Hb_000985_060 0.1136802852 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
10 Hb_000125_190 0.114584013 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
11 Hb_003687_150 0.1149107011 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
12 Hb_002005_020 0.1172433517 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000108_070 0.1175291029 - - alpha-tubulin 1 [Hevea brasiliensis]
14 Hb_001904_090 0.1177849332 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
15 Hb_011457_090 0.1193853537 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
16 Hb_001519_050 0.1195257703 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
17 Hb_033594_150 0.12069767 - - unknown [Lotus japonicus]
18 Hb_027073_050 0.1208238541 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
19 Hb_007926_060 0.1209992256 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
20 Hb_015778_010 0.1220116012 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001080_280 Hb_001080_280 Hb_004705_120 Hb_004705_120 Hb_001080_280--Hb_004705_120 Hb_001519_030 Hb_001519_030 Hb_001080_280--Hb_001519_030 Hb_000635_150 Hb_000635_150 Hb_001080_280--Hb_000635_150 Hb_000123_170 Hb_000123_170 Hb_001080_280--Hb_000123_170 Hb_001105_070 Hb_001105_070 Hb_001080_280--Hb_001105_070 Hb_011953_020 Hb_011953_020 Hb_001080_280--Hb_011953_020 Hb_001519_050 Hb_001519_050 Hb_004705_120--Hb_001519_050 Hb_000125_190 Hb_000125_190 Hb_004705_120--Hb_000125_190 Hb_008616_070 Hb_008616_070 Hb_004705_120--Hb_008616_070 Hb_000373_130 Hb_000373_130 Hb_004705_120--Hb_000373_130 Hb_015778_010 Hb_015778_010 Hb_004705_120--Hb_015778_010 Hb_001481_140 Hb_001481_140 Hb_001519_030--Hb_001481_140 Hb_006569_100 Hb_006569_100 Hb_001519_030--Hb_006569_100 Hb_001005_080 Hb_001005_080 Hb_001519_030--Hb_001005_080 Hb_005527_040 Hb_005527_040 Hb_001519_030--Hb_005527_040 Hb_000817_030 Hb_000817_030 Hb_001519_030--Hb_000817_030 Hb_001904_090 Hb_001904_090 Hb_001519_030--Hb_001904_090 Hb_000985_060 Hb_000985_060 Hb_000635_150--Hb_000985_060 Hb_000635_150--Hb_001519_050 Hb_005092_060 Hb_005092_060 Hb_000635_150--Hb_005092_060 Hb_000635_150--Hb_000125_190 Hb_002759_060 Hb_002759_060 Hb_000635_150--Hb_002759_060 Hb_002005_020 Hb_002005_020 Hb_000635_150--Hb_002005_020 Hb_020400_050 Hb_020400_050 Hb_000123_170--Hb_020400_050 Hb_001396_100 Hb_001396_100 Hb_000123_170--Hb_001396_100 Hb_000123_170--Hb_000125_190 Hb_000025_120 Hb_000025_120 Hb_000123_170--Hb_000025_120 Hb_000123_170--Hb_001904_090 Hb_000668_040 Hb_000668_040 Hb_000123_170--Hb_000668_040 Hb_005431_010 Hb_005431_010 Hb_001105_070--Hb_005431_010 Hb_001105_070--Hb_000025_120 Hb_012053_070 Hb_012053_070 Hb_001105_070--Hb_012053_070 Hb_000987_070 Hb_000987_070 Hb_001105_070--Hb_000987_070 Hb_009773_020 Hb_009773_020 Hb_001105_070--Hb_009773_020 Hb_065525_020 Hb_065525_020 Hb_001105_070--Hb_065525_020 Hb_011953_020--Hb_002005_020 Hb_093458_050 Hb_093458_050 Hb_011953_020--Hb_093458_050 Hb_029866_020 Hb_029866_020 Hb_011953_020--Hb_029866_020 Hb_003551_050 Hb_003551_050 Hb_011953_020--Hb_003551_050 Hb_011953_020--Hb_001519_050 Hb_011953_020--Hb_001519_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.28734 3.6856 3.13238 12.7331 4.00358 6.55923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6651 13.8386 21.7888 8.27914 4.98793

CAGE analysis