Hb_005431_010

Information

Type -
Description -
Location Contig5431: 5344-9471
Sequence    

Annotation

kegg
ID cic:CICLE_v10017047mg
description hypothetical protein
nr
ID XP_012089659.1
description PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
swissprot
ID O82179
description Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=GDH2 PE=2 SV=1
trembl
ID A0A067JGE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01773 PE=3 SV=1
Gene Ontology
ID GO:0005960
description glycine cleavage system h protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47880: 5477-9439
cDNA
(Sanger)
(ID:Location)		 026_E22.ab1: 5557-9328

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005431_010 0.0 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
2 Hb_001105_070 0.0582135749 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
3 Hb_000009_160 0.065546794 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
4 Hb_029866_040 0.0685448222 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
5 Hb_000705_210 0.0793802898 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
6 Hb_000905_200 0.0810958655 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
7 Hb_009773_020 0.0813306525 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
8 Hb_158467_010 0.0837309964 - - transporter, putative [Ricinus communis]
9 Hb_000347_410 0.0837823769 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
10 Hb_000111_330 0.0839026806 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
11 Hb_002301_140 0.0846832242 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
12 Hb_000025_120 0.0857507851 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
13 Hb_002056_060 0.0863794918 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
14 Hb_002163_020 0.0875809074 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
15 Hb_000574_480 0.0879695658 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
16 Hb_129204_030 0.0890198115 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
17 Hb_000240_090 0.0900244271 - - Rab5 [Hevea brasiliensis]
18 Hb_005289_030 0.0909788115 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
19 Hb_000146_020 0.091511983 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
20 Hb_011381_100 0.0917112686 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_005431_010 Hb_005431_010 Hb_001105_070 Hb_001105_070 Hb_005431_010--Hb_001105_070 Hb_000009_160 Hb_000009_160 Hb_005431_010--Hb_000009_160 Hb_029866_040 Hb_029866_040 Hb_005431_010--Hb_029866_040 Hb_000705_210 Hb_000705_210 Hb_005431_010--Hb_000705_210 Hb_000905_200 Hb_000905_200 Hb_005431_010--Hb_000905_200 Hb_009773_020 Hb_009773_020 Hb_005431_010--Hb_009773_020 Hb_000025_120 Hb_000025_120 Hb_001105_070--Hb_000025_120 Hb_012053_070 Hb_012053_070 Hb_001105_070--Hb_012053_070 Hb_000987_070 Hb_000987_070 Hb_001105_070--Hb_000987_070 Hb_001105_070--Hb_009773_020 Hb_065525_020 Hb_065525_020 Hb_001105_070--Hb_065525_020 Hb_000671_090 Hb_000671_090 Hb_000009_160--Hb_000671_090 Hb_007943_090 Hb_007943_090 Hb_000009_160--Hb_007943_090 Hb_000205_270 Hb_000205_270 Hb_000009_160--Hb_000205_270 Hb_016065_010 Hb_016065_010 Hb_000009_160--Hb_016065_010 Hb_055062_030 Hb_055062_030 Hb_000009_160--Hb_055062_030 Hb_000377_060 Hb_000377_060 Hb_029866_040--Hb_000377_060 Hb_000001_050 Hb_000001_050 Hb_029866_040--Hb_000001_050 Hb_011381_100 Hb_011381_100 Hb_029866_040--Hb_011381_100 Hb_001109_020 Hb_001109_020 Hb_029866_040--Hb_001109_020 Hb_029866_040--Hb_000009_160 Hb_000705_210--Hb_000987_070 Hb_000705_210--Hb_001105_070 Hb_029866_090 Hb_029866_090 Hb_000705_210--Hb_029866_090 Hb_000705_210--Hb_012053_070 Hb_000510_130 Hb_000510_130 Hb_000705_210--Hb_000510_130 Hb_001912_010 Hb_001912_010 Hb_000905_200--Hb_001912_010 Hb_000347_410 Hb_000347_410 Hb_000905_200--Hb_000347_410 Hb_002909_070 Hb_002909_070 Hb_000905_200--Hb_002909_070 Hb_029866_060 Hb_029866_060 Hb_000905_200--Hb_029866_060 Hb_007926_060 Hb_007926_060 Hb_000905_200--Hb_007926_060 Hb_002030_040 Hb_002030_040 Hb_009773_020--Hb_002030_040 Hb_009773_020--Hb_065525_020 Hb_000103_560 Hb_000103_560 Hb_009773_020--Hb_000103_560 Hb_000840_030 Hb_000840_030 Hb_009773_020--Hb_000840_030 Hb_002301_140 Hb_002301_140 Hb_009773_020--Hb_002301_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
198.747 107.891 64.0112 156.035 150.615 156.659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
303.339 342.642 348.228 101.778 53.3273

CAGE analysis