Hb_000905_200

Information

Type -
Description -
Location Contig905: 188477-195032
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06840g
description POPTRDRAFT_722755; zinc finger family protein
nr
ID XP_012065536.1
description PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
swissprot
ID Q9LHJ8
description Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=2 SV=1
trembl
ID A0A067L4Q5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16738 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger a20 and an1 domain-containing stress-associated protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62017: 188074-189165
cDNA
(Sanger)
(ID:Location)		 002_A15.ab1: 188328-189165 , 006_P16.ab1: 188400-189165 , 009_E13.ab1: 188369-189165 , 021_N15.ab1: 188397-189165 , 044_H14.ab1: 188397-189165 , 052_L19.ab1: 188201-188536

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_200 0.0 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
2 Hb_005431_010 0.0810958655 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
3 Hb_001912_010 0.0864471307 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
4 Hb_000347_410 0.0918005132 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
5 Hb_002909_070 0.0921804594 - - hypothetical protein POPTR_0006s03000g [Populus trichocarpa]
6 Hb_029866_060 0.0975280895 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
7 Hb_007926_060 0.0990172939 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
8 Hb_002163_020 0.0999569744 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
9 Hb_000146_020 0.1008363923 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
10 Hb_002284_010 0.1016151192 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000009_160 0.1035679777 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
12 Hb_002798_050 0.1038678702 - - l-allo-threonine aldolase, putative [Ricinus communis]
13 Hb_007382_150 0.104124441 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
14 Hb_006573_220 0.1070798399 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
15 Hb_000025_120 0.1072883191 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
16 Hb_005941_040 0.1074863471 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
17 Hb_000030_150 0.1077897922 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_001105_070 0.1079654468 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
19 Hb_003376_030 0.1080204236 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
20 Hb_007479_020 0.1090221324 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000905_200 Hb_000905_200 Hb_005431_010 Hb_005431_010 Hb_000905_200--Hb_005431_010 Hb_001912_010 Hb_001912_010 Hb_000905_200--Hb_001912_010 Hb_000347_410 Hb_000347_410 Hb_000905_200--Hb_000347_410 Hb_002909_070 Hb_002909_070 Hb_000905_200--Hb_002909_070 Hb_029866_060 Hb_029866_060 Hb_000905_200--Hb_029866_060 Hb_007926_060 Hb_007926_060 Hb_000905_200--Hb_007926_060 Hb_001105_070 Hb_001105_070 Hb_005431_010--Hb_001105_070 Hb_000009_160 Hb_000009_160 Hb_005431_010--Hb_000009_160 Hb_029866_040 Hb_029866_040 Hb_005431_010--Hb_029866_040 Hb_000705_210 Hb_000705_210 Hb_005431_010--Hb_000705_210 Hb_009773_020 Hb_009773_020 Hb_005431_010--Hb_009773_020 Hb_000212_260 Hb_000212_260 Hb_001912_010--Hb_000212_260 Hb_007479_020 Hb_007479_020 Hb_001912_010--Hb_007479_020 Hb_010172_070 Hb_010172_070 Hb_001912_010--Hb_010172_070 Hb_006573_220 Hb_006573_220 Hb_001912_010--Hb_006573_220 Hb_000329_330 Hb_000329_330 Hb_001912_010--Hb_000329_330 Hb_003376_030 Hb_003376_030 Hb_001912_010--Hb_003376_030 Hb_000146_020 Hb_000146_020 Hb_000347_410--Hb_000146_020 Hb_029866_020 Hb_029866_020 Hb_000347_410--Hb_029866_020 Hb_000025_120 Hb_000025_120 Hb_000347_410--Hb_000025_120 Hb_000347_410--Hb_003376_030 Hb_004586_320 Hb_004586_320 Hb_000347_410--Hb_004586_320 Hb_000240_090 Hb_000240_090 Hb_000347_410--Hb_000240_090 Hb_000030_150 Hb_000030_150 Hb_002909_070--Hb_000030_150 Hb_003893_090 Hb_003893_090 Hb_002909_070--Hb_003893_090 Hb_003106_050 Hb_003106_050 Hb_002909_070--Hb_003106_050 Hb_002182_060 Hb_002182_060 Hb_002909_070--Hb_002182_060 Hb_002301_140 Hb_002301_140 Hb_002909_070--Hb_002301_140 Hb_003656_070 Hb_003656_070 Hb_029866_060--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_029866_060--Hb_008173_090 Hb_002284_010 Hb_002284_010 Hb_029866_060--Hb_002284_010 Hb_000111_330 Hb_000111_330 Hb_029866_060--Hb_000111_330 Hb_002163_020 Hb_002163_020 Hb_029866_060--Hb_002163_020 Hb_129204_030 Hb_129204_030 Hb_029866_060--Hb_129204_030 Hb_004374_140 Hb_004374_140 Hb_007926_060--Hb_004374_140 Hb_004449_200 Hb_004449_200 Hb_007926_060--Hb_004449_200 Hb_008544_010 Hb_008544_010 Hb_007926_060--Hb_008544_010 Hb_007926_060--Hb_006573_220 Hb_001461_010 Hb_001461_010 Hb_007926_060--Hb_001461_010 Hb_007926_060--Hb_001105_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
258.191 184.255 107.459 199.767 200.964 253.701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
605.372 566.195 577.444 95.4397 48.1946

CAGE analysis