Hb_003893_090

Information

Type -
Description -
Location Contig3893: 78570-81307
Sequence    

Annotation

kegg
ID rcu:RCOM_1505560
description Alpha-1,4-glucan-protein synthase [UDP-forming], putative (EC:2.4.1.186)
nr
ID XP_002511153.1
description Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
swissprot
ID Q9SRT9
description UDP-arabinopyranose mutase 1 OS=Arabidopsis thaliana GN=RGP1 PE=1 SV=1
trembl
ID B9RAC8
description Alpha-1,4-glucan-protein synthase [UDP-forming], putative OS=Ricinus communis GN=RCOM_1505560 PE=4 SV=1
Gene Ontology
ID GO:0008466
description alpha- -glucan-protein synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39003: 78567-81264 , PASA_asmbl_39004: 79142-80209 , PASA_asmbl_39005: 79380-79606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003893_090 0.0 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
2 Hb_014720_080 0.0838304307 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
3 Hb_002909_070 0.0862612595 - - hypothetical protein POPTR_0006s03000g [Populus trichocarpa]
4 Hb_002540_030 0.0955632257 - - hypothetical protein 32 [Hevea brasiliensis]
5 Hb_003125_150 0.096468104 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
6 Hb_000815_260 0.0980282205 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
7 Hb_002182_060 0.0991241599 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
8 Hb_001722_100 0.0994629625 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000333_090 0.1026619087 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
10 Hb_004657_020 0.1049459782 - - rer1 protein, putative [Ricinus communis]
11 Hb_000045_190 0.1053465312 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
12 Hb_003106_050 0.1069582148 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
13 Hb_000025_120 0.1072042779 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
14 Hb_007479_020 0.1076613152 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
15 Hb_010883_150 0.1092951966 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
16 Hb_001269_270 0.1102089189 - - 60S ribosomal protein L27B [Hevea brasiliensis]
17 Hb_010172_070 0.1107749979 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
18 Hb_000221_150 0.1120871616 - - -
19 Hb_001912_010 0.1124511019 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
20 Hb_001045_080 0.1131199519 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]

Gene co-expression network

sample Hb_003893_090 Hb_003893_090 Hb_014720_080 Hb_014720_080 Hb_003893_090--Hb_014720_080 Hb_002909_070 Hb_002909_070 Hb_003893_090--Hb_002909_070 Hb_002540_030 Hb_002540_030 Hb_003893_090--Hb_002540_030 Hb_003125_150 Hb_003125_150 Hb_003893_090--Hb_003125_150 Hb_000815_260 Hb_000815_260 Hb_003893_090--Hb_000815_260 Hb_002182_060 Hb_002182_060 Hb_003893_090--Hb_002182_060 Hb_001722_100 Hb_001722_100 Hb_014720_080--Hb_001722_100 Hb_000025_120 Hb_000025_120 Hb_014720_080--Hb_000025_120 Hb_021650_030 Hb_021650_030 Hb_014720_080--Hb_021650_030 Hb_014720_080--Hb_002540_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_014720_080--Hb_000834_270 Hb_000030_150 Hb_000030_150 Hb_002909_070--Hb_000030_150 Hb_000905_200 Hb_000905_200 Hb_002909_070--Hb_000905_200 Hb_003106_050 Hb_003106_050 Hb_002909_070--Hb_003106_050 Hb_002909_070--Hb_002182_060 Hb_002301_140 Hb_002301_140 Hb_002909_070--Hb_002301_140 Hb_010172_070 Hb_010172_070 Hb_002540_030--Hb_010172_070 Hb_000922_270 Hb_000922_270 Hb_002540_030--Hb_000922_270 Hb_007666_020 Hb_007666_020 Hb_002540_030--Hb_007666_020 Hb_001538_100 Hb_001538_100 Hb_002540_030--Hb_001538_100 Hb_001269_270 Hb_001269_270 Hb_003125_150--Hb_001269_270 Hb_001045_080 Hb_001045_080 Hb_003125_150--Hb_001045_080 Hb_000312_090 Hb_000312_090 Hb_003125_150--Hb_000312_090 Hb_009851_100 Hb_009851_100 Hb_003125_150--Hb_009851_100 Hb_007479_020 Hb_007479_020 Hb_003125_150--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_003125_150--Hb_000120_750 Hb_000184_050 Hb_000184_050 Hb_000815_260--Hb_000184_050 Hb_130291_010 Hb_130291_010 Hb_000815_260--Hb_130291_010 Hb_004724_160 Hb_004724_160 Hb_000815_260--Hb_004724_160 Hb_002701_050 Hb_002701_050 Hb_000815_260--Hb_002701_050 Hb_000975_110 Hb_000975_110 Hb_000815_260--Hb_000975_110 Hb_001433_050 Hb_001433_050 Hb_000815_260--Hb_001433_050 Hb_008173_090 Hb_008173_090 Hb_002182_060--Hb_008173_090 Hb_000099_060 Hb_000099_060 Hb_002182_060--Hb_000099_060 Hb_000970_010 Hb_000970_010 Hb_002182_060--Hb_000970_010 Hb_000200_100 Hb_000200_100 Hb_002182_060--Hb_000200_100 Hb_002182_060--Hb_003106_050 Hb_002182_060--Hb_002301_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
172.012 78.9666 32.3327 79.8847 65.2694 144.788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
343.5 317.498 185.497 75.9113 19.7456

CAGE analysis