Hb_002540_030

Information

Type -
Description -
Location Contig2540: 49172-49528
Sequence    

Annotation

kegg
ID rcu:RCOM_0092370
description hypothetical protein
nr
ID ADR71310.1
description hypothetical protein 32 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I3NMS3
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 004_D24.ab1: 48946-49577 , 035_B19.ab1: 48941-49575

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002540_030 0.0 - - hypothetical protein 32 [Hevea brasiliensis]
2 Hb_014720_080 0.067559267 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
3 Hb_010172_070 0.0775037385 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
4 Hb_000922_270 0.0884719189 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
5 Hb_007666_020 0.0888349795 - - alkaline phytoceramidase, putative [Ricinus communis]
6 Hb_003893_090 0.0955632257 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
7 Hb_001538_100 0.096526062 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
8 Hb_000196_090 0.0967892285 - - axonemal dynein light chain, putative [Ricinus communis]
9 Hb_001329_210 0.0968377969 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_001722_100 0.0977632173 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000146_020 0.1012897025 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
12 Hb_003106_050 0.1066252517 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
13 Hb_174865_030 0.1070660713 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
14 Hb_021650_030 0.109723888 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
15 Hb_000522_080 0.1105975874 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
16 Hb_002411_200 0.1107377886 - - conserved hypothetical protein [Ricinus communis]
17 Hb_155764_020 0.1121574924 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
18 Hb_008289_060 0.1126750366 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
19 Hb_002909_060 0.1137339586 - - 3-5 exonuclease, putative [Ricinus communis]
20 Hb_002529_100 0.1144121845 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002540_030 Hb_002540_030 Hb_014720_080 Hb_014720_080 Hb_002540_030--Hb_014720_080 Hb_010172_070 Hb_010172_070 Hb_002540_030--Hb_010172_070 Hb_000922_270 Hb_000922_270 Hb_002540_030--Hb_000922_270 Hb_007666_020 Hb_007666_020 Hb_002540_030--Hb_007666_020 Hb_003893_090 Hb_003893_090 Hb_002540_030--Hb_003893_090 Hb_001538_100 Hb_001538_100 Hb_002540_030--Hb_001538_100 Hb_001722_100 Hb_001722_100 Hb_014720_080--Hb_001722_100 Hb_000025_120 Hb_000025_120 Hb_014720_080--Hb_000025_120 Hb_021650_030 Hb_021650_030 Hb_014720_080--Hb_021650_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_014720_080--Hb_000834_270 Hb_007479_020 Hb_007479_020 Hb_010172_070--Hb_007479_020 Hb_001912_010 Hb_001912_010 Hb_010172_070--Hb_001912_010 Hb_010172_070--Hb_001722_100 Hb_010172_070--Hb_014720_080 Hb_010172_070--Hb_000922_270 Hb_001257_080 Hb_001257_080 Hb_010172_070--Hb_001257_080 Hb_003408_020 Hb_003408_020 Hb_000922_270--Hb_003408_020 Hb_000922_270--Hb_007666_020 Hb_001711_030 Hb_001711_030 Hb_000922_270--Hb_001711_030 Hb_000051_040 Hb_000051_040 Hb_000922_270--Hb_000051_040 Hb_000922_270--Hb_014720_080 Hb_005618_040 Hb_005618_040 Hb_007666_020--Hb_005618_040 Hb_002527_070 Hb_002527_070 Hb_007666_020--Hb_002527_070 Hb_007666_020--Hb_001711_030 Hb_002411_200 Hb_002411_200 Hb_007666_020--Hb_002411_200 Hb_003893_090--Hb_014720_080 Hb_002909_070 Hb_002909_070 Hb_003893_090--Hb_002909_070 Hb_003125_150 Hb_003125_150 Hb_003893_090--Hb_003125_150 Hb_000815_260 Hb_000815_260 Hb_003893_090--Hb_000815_260 Hb_002182_060 Hb_002182_060 Hb_003893_090--Hb_002182_060 Hb_004109_020 Hb_004109_020 Hb_001538_100--Hb_004109_020 Hb_003376_130 Hb_003376_130 Hb_001538_100--Hb_003376_130 Hb_003086_100 Hb_003086_100 Hb_001538_100--Hb_003086_100 Hb_002107_120 Hb_002107_120 Hb_001538_100--Hb_002107_120 Hb_148930_010 Hb_148930_010 Hb_001538_100--Hb_148930_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
238.756 126.483 39.4668 53.5897 141.883 147.53
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
487.392 433.794 329.606 137.44 29.8361

CAGE analysis