Hb_002527_070

Information

Type -
Description -
Location Contig2527: 62120-63605
Sequence    

Annotation

kegg
ID rcu:RCOM_1333990
description axonemal dynein light chain, putative
nr
ID XP_002521826.1
description axonemal dynein light chain, putative [Ricinus communis]
swissprot
ID O02414
description Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1
trembl
ID B9S757
description Axonemal dynein light chain, putative OS=Ricinus communis GN=RCOM_1333990 PE=4 SV=1
Gene Ontology
ID GO:0005875
description axonemal dynein light

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26447: 61560-63304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002527_070 0.0 - - axonemal dynein light chain, putative [Ricinus communis]
2 Hb_001427_120 0.0759674953 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
3 Hb_000861_040 0.0774419088 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
4 Hb_001711_030 0.0776926327 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
5 Hb_003408_030 0.0777480065 - - PREDICTED: protein YIF1B [Jatropha curcas]
6 Hb_000983_100 0.0782326989 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
7 Hb_002352_010 0.0802677742 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
8 Hb_071736_020 0.0819646171 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
9 Hb_001473_130 0.0826230048 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
10 Hb_002282_020 0.0830462999 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
11 Hb_002326_030 0.0832468549 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
12 Hb_000089_160 0.0838889319 - - 60S ribosomal protein L5B [Hevea brasiliensis]
13 Hb_000753_130 0.0857275721 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
14 Hb_023386_080 0.0864259197 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
15 Hb_000086_570 0.0880247022 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
16 Hb_003408_020 0.0880812361 - - hypothetical protein RCOM_0453040 [Ricinus communis]
17 Hb_001718_100 0.0920740338 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
18 Hb_044662_070 0.0925351175 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
19 Hb_000317_030 0.0927630165 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
20 Hb_007924_020 0.0931444828 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002527_070 Hb_002527_070 Hb_001427_120 Hb_001427_120 Hb_002527_070--Hb_001427_120 Hb_000861_040 Hb_000861_040 Hb_002527_070--Hb_000861_040 Hb_001711_030 Hb_001711_030 Hb_002527_070--Hb_001711_030 Hb_003408_030 Hb_003408_030 Hb_002527_070--Hb_003408_030 Hb_000983_100 Hb_000983_100 Hb_002527_070--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_002527_070--Hb_002352_010 Hb_000956_010 Hb_000956_010 Hb_001427_120--Hb_000956_010 Hb_001718_100 Hb_001718_100 Hb_001427_120--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_001427_120--Hb_000086_570 Hb_000376_050 Hb_000376_050 Hb_001427_120--Hb_000376_050 Hb_071736_020 Hb_071736_020 Hb_001427_120--Hb_071736_020 Hb_022250_040 Hb_022250_040 Hb_001427_120--Hb_022250_040 Hb_000861_040--Hb_003408_030 Hb_002326_030 Hb_002326_030 Hb_000861_040--Hb_002326_030 Hb_007229_060 Hb_007229_060 Hb_000861_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000861_040--Hb_000983_100 Hb_001863_480 Hb_001863_480 Hb_001711_030--Hb_001863_480 Hb_000051_040 Hb_000051_040 Hb_001711_030--Hb_000051_040 Hb_012522_030 Hb_012522_030 Hb_001711_030--Hb_012522_030 Hb_000922_270 Hb_000922_270 Hb_001711_030--Hb_000922_270 Hb_001439_170 Hb_001439_170 Hb_001711_030--Hb_001439_170 Hb_000753_130 Hb_000753_130 Hb_003408_030--Hb_000753_130 Hb_003376_120 Hb_003376_120 Hb_003408_030--Hb_003376_120 Hb_007924_020 Hb_007924_020 Hb_003408_030--Hb_007924_020 Hb_000627_120 Hb_000627_120 Hb_003408_030--Hb_000627_120 Hb_000983_100--Hb_007229_060 Hb_001473_130 Hb_001473_130 Hb_000983_100--Hb_001473_130 Hb_000091_090 Hb_000091_090 Hb_000983_100--Hb_000091_090 Hb_002025_320 Hb_002025_320 Hb_000983_100--Hb_002025_320 Hb_000983_100--Hb_026988_020 Hb_002352_010--Hb_001473_130 Hb_000427_110 Hb_000427_110 Hb_002352_010--Hb_000427_110 Hb_001677_110 Hb_001677_110 Hb_002352_010--Hb_001677_110 Hb_002352_010--Hb_002326_030 Hb_002352_010--Hb_012522_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.3347 5.40279 6.88746 7.30761 18.6867 28.1964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.2324 36.1881 50.3423 10.8737 3.03363

CAGE analysis