Hb_001439_170

Information

Type -
Description -
Location Contig1439: 168569-172104
Sequence    

Annotation

kegg
ID pop:POPTR_0023s00200g
description hypothetical protein
nr
ID XP_012084742.1
description PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
swissprot
ID Q9LVQ0
description Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1
trembl
ID B9H3W4
description Pectinesterase OS=Populus trichocarpa GN=POPTR_0004s13310g PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11602: 168576-171995 , PASA_asmbl_11603: 169683-170164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_170 0.0 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
2 Hb_000012_130 0.0849948205 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
3 Hb_001711_030 0.0850174285 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
4 Hb_001863_480 0.0854812216 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
5 Hb_002119_120 0.088757207 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
6 Hb_044662_070 0.0915378939 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
7 Hb_002539_080 0.0956810473 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
8 Hb_000922_270 0.097702882 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
9 Hb_007924_020 0.0984147647 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_004738_010 0.099568417 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
11 Hb_003408_020 0.1086315434 - - hypothetical protein RCOM_0453040 [Ricinus communis]
12 Hb_012522_030 0.1088285596 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_000419_040 0.1099504563 - - chorismate synthase [Hevea brasiliensis]
14 Hb_000622_040 0.1121026582 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
15 Hb_002282_020 0.1128738727 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
16 Hb_000051_040 0.1142257589 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
17 Hb_002735_060 0.1162518193 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
18 Hb_024650_020 0.1168191226 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
19 Hb_001912_010 0.1191821293 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
20 Hb_009404_020 0.1192694789 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001439_170 Hb_001439_170 Hb_000012_130 Hb_000012_130 Hb_001439_170--Hb_000012_130 Hb_001711_030 Hb_001711_030 Hb_001439_170--Hb_001711_030 Hb_001863_480 Hb_001863_480 Hb_001439_170--Hb_001863_480 Hb_002119_120 Hb_002119_120 Hb_001439_170--Hb_002119_120 Hb_044662_070 Hb_044662_070 Hb_001439_170--Hb_044662_070 Hb_002539_080 Hb_002539_080 Hb_001439_170--Hb_002539_080 Hb_024714_060 Hb_024714_060 Hb_000012_130--Hb_024714_060 Hb_007594_120 Hb_007594_120 Hb_000012_130--Hb_007594_120 Hb_002027_400 Hb_002027_400 Hb_000012_130--Hb_002027_400 Hb_002759_230 Hb_002759_230 Hb_000012_130--Hb_002759_230 Hb_001160_030 Hb_001160_030 Hb_000012_130--Hb_001160_030 Hb_001711_030--Hb_001863_480 Hb_000051_040 Hb_000051_040 Hb_001711_030--Hb_000051_040 Hb_012522_030 Hb_012522_030 Hb_001711_030--Hb_012522_030 Hb_002527_070 Hb_002527_070 Hb_001711_030--Hb_002527_070 Hb_000922_270 Hb_000922_270 Hb_001711_030--Hb_000922_270 Hb_004738_010 Hb_004738_010 Hb_001863_480--Hb_004738_010 Hb_003408_020 Hb_003408_020 Hb_001863_480--Hb_003408_020 Hb_171554_080 Hb_171554_080 Hb_001863_480--Hb_171554_080 Hb_001863_480--Hb_002539_080 Hb_002119_120--Hb_004738_010 Hb_002119_120--Hb_001863_480 Hb_000487_310 Hb_000487_310 Hb_002119_120--Hb_000487_310 Hb_002119_120--Hb_001711_030 Hb_001437_220 Hb_001437_220 Hb_002119_120--Hb_001437_220 Hb_023386_080 Hb_023386_080 Hb_044662_070--Hb_023386_080 Hb_004108_230 Hb_004108_230 Hb_044662_070--Hb_004108_230 Hb_007924_020 Hb_007924_020 Hb_044662_070--Hb_007924_020 Hb_003175_040 Hb_003175_040 Hb_044662_070--Hb_003175_040 Hb_044662_070--Hb_003408_020 Hb_003376_120 Hb_003376_120 Hb_044662_070--Hb_003376_120 Hb_002282_020 Hb_002282_020 Hb_002539_080--Hb_002282_020 Hb_002539_080--Hb_001711_030 Hb_002539_080--Hb_002527_070 Hb_002735_060 Hb_002735_060 Hb_002539_080--Hb_002735_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
142.762 15.2783 41.4661 31.4461 94.4032 68.4867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
294.289 175.677 209.051 33.8803 30.3308

CAGE analysis