Hb_000487_310

Information

Type -
Description -
Location Contig487: 266025-270557
Sequence    

Annotation

kegg
ID rcu:RCOM_1576200
description hypothetical protein
nr
ID XP_012087412.1
description PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22653 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45028: 266088-270811 , PASA_asmbl_45029: 266107-269672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_310 0.0 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
2 Hb_009404_020 0.0868445963 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002119_120 0.1000070433 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
4 Hb_001711_030 0.1009963524 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
5 Hb_004108_230 0.1026571324 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
6 Hb_005432_030 0.104021563 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
7 Hb_003777_180 0.1040458981 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
8 Hb_001437_220 0.1042245232 - - Transmembrane protein, putative [Ricinus communis]
9 Hb_002600_100 0.108230395 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
10 Hb_002027_210 0.1111104664 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
11 Hb_007924_020 0.1111866096 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_002918_200 0.1116781478 - - -
13 Hb_002759_230 0.115363228 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
14 Hb_007021_020 0.1158610434 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
15 Hb_003581_090 0.1172492986 - - PREDICTED: galactose oxidase [Jatropha curcas]
16 Hb_000120_750 0.1181586327 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
17 Hb_001439_170 0.1209065612 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
18 Hb_004899_320 0.121376763 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
19 Hb_001616_060 0.1221155432 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
20 Hb_002026_190 0.1222563778 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]

Gene co-expression network

sample Hb_000487_310 Hb_000487_310 Hb_009404_020 Hb_009404_020 Hb_000487_310--Hb_009404_020 Hb_002119_120 Hb_002119_120 Hb_000487_310--Hb_002119_120 Hb_001711_030 Hb_001711_030 Hb_000487_310--Hb_001711_030 Hb_004108_230 Hb_004108_230 Hb_000487_310--Hb_004108_230 Hb_005432_030 Hb_005432_030 Hb_000487_310--Hb_005432_030 Hb_003777_180 Hb_003777_180 Hb_000487_310--Hb_003777_180 Hb_011465_040 Hb_011465_040 Hb_009404_020--Hb_011465_040 Hb_001616_060 Hb_001616_060 Hb_009404_020--Hb_001616_060 Hb_009404_020--Hb_004108_230 Hb_000922_270 Hb_000922_270 Hb_009404_020--Hb_000922_270 Hb_002918_200 Hb_002918_200 Hb_009404_020--Hb_002918_200 Hb_004738_010 Hb_004738_010 Hb_002119_120--Hb_004738_010 Hb_001439_170 Hb_001439_170 Hb_002119_120--Hb_001439_170 Hb_001863_480 Hb_001863_480 Hb_002119_120--Hb_001863_480 Hb_002119_120--Hb_001711_030 Hb_001437_220 Hb_001437_220 Hb_002119_120--Hb_001437_220 Hb_001711_030--Hb_001863_480 Hb_000051_040 Hb_000051_040 Hb_001711_030--Hb_000051_040 Hb_012522_030 Hb_012522_030 Hb_001711_030--Hb_012522_030 Hb_002527_070 Hb_002527_070 Hb_001711_030--Hb_002527_070 Hb_001711_030--Hb_000922_270 Hb_001711_030--Hb_001439_170 Hb_004108_230--Hb_002918_200 Hb_000120_750 Hb_000120_750 Hb_004108_230--Hb_000120_750 Hb_003175_040 Hb_003175_040 Hb_004108_230--Hb_003175_040 Hb_004837_140 Hb_004837_140 Hb_004108_230--Hb_004837_140 Hb_011794_070 Hb_011794_070 Hb_004108_230--Hb_011794_070 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070 Hb_000170_010 Hb_000170_010 Hb_005432_030--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_005432_030--Hb_002027_210 Hb_000625_070 Hb_000625_070 Hb_005432_030--Hb_000625_070 Hb_000496_060 Hb_000496_060 Hb_005432_030--Hb_000496_060 Hb_005432_030--Hb_004108_230 Hb_005432_030--Hb_003175_040 Hb_000481_020 Hb_000481_020 Hb_003777_180--Hb_000481_020 Hb_000329_040 Hb_000329_040 Hb_003777_180--Hb_000329_040 Hb_000412_110 Hb_000412_110 Hb_003777_180--Hb_000412_110 Hb_002681_020 Hb_002681_020 Hb_003777_180--Hb_002681_020 Hb_000676_220 Hb_000676_220 Hb_003777_180--Hb_000676_220 Hb_006569_020 Hb_006569_020 Hb_003777_180--Hb_006569_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.9678 6.54049 5.2206 7.65906 19.9384 25.171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.4392 58.9433 43.3778 6.51413 15.9937

CAGE analysis