Hb_000481_020

Information

Type -
Description -
Location Contig481: 43772-48739
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa009120mg
description hypothetical protein
nr
ID XP_012075231.1
description PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9SJ05
description Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=SK1 PE=1 SV=2
trembl
ID A0A067KSL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09404 PE=3 SV=1
Gene Ontology
ID GO:0004765
description shikimate kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44741: 43812-48632
cDNA
(Sanger)
(ID:Location)		 014_G24.ab1: 45473-48628 , 015_A11.ab1: 45419-48578 , 033_F08.ab1: 45201-48575

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000481_020 0.0 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
2 Hb_003777_180 0.0863643434 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
3 Hb_007766_010 0.0940061198 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
4 Hb_000184_040 0.1061743382 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
5 Hb_006120_200 0.1079742571 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
6 Hb_002681_020 0.1090666098 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_007919_050 0.1143102299 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
8 Hb_010483_020 0.1148487997 - - latex allergen [Hevea brasiliensis]
9 Hb_003052_100 0.1172315963 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_002235_400 0.1204678257 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
11 Hb_006569_020 0.1207778372 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
12 Hb_003050_230 0.1210962507 - - conserved hypothetical protein [Ricinus communis]
13 Hb_159558_030 0.1246409093 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
14 Hb_000676_220 0.1262366308 - - ADP-ribosylation factor, putative [Ricinus communis]
15 Hb_004659_120 0.1264758884 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
16 Hb_000316_110 0.1267916503 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
17 Hb_002681_110 0.1271299956 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
18 Hb_004724_140 0.1271776902 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
19 Hb_006070_010 0.1279105815 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
20 Hb_000500_130 0.1280368426 - - small GTPase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000481_020 Hb_000481_020 Hb_003777_180 Hb_003777_180 Hb_000481_020--Hb_003777_180 Hb_007766_010 Hb_007766_010 Hb_000481_020--Hb_007766_010 Hb_000184_040 Hb_000184_040 Hb_000481_020--Hb_000184_040 Hb_006120_200 Hb_006120_200 Hb_000481_020--Hb_006120_200 Hb_002681_020 Hb_002681_020 Hb_000481_020--Hb_002681_020 Hb_007919_050 Hb_007919_050 Hb_000481_020--Hb_007919_050 Hb_000329_040 Hb_000329_040 Hb_003777_180--Hb_000329_040 Hb_000412_110 Hb_000412_110 Hb_003777_180--Hb_000412_110 Hb_003777_180--Hb_002681_020 Hb_000676_220 Hb_000676_220 Hb_003777_180--Hb_000676_220 Hb_006569_020 Hb_006569_020 Hb_003777_180--Hb_006569_020 Hb_004724_040 Hb_004724_040 Hb_007766_010--Hb_004724_040 Hb_006070_010 Hb_006070_010 Hb_007766_010--Hb_006070_010 Hb_010483_020 Hb_010483_020 Hb_007766_010--Hb_010483_020 Hb_000258_430 Hb_000258_430 Hb_007766_010--Hb_000258_430 Hb_001696_030 Hb_001696_030 Hb_007766_010--Hb_001696_030 Hb_001047_010 Hb_001047_010 Hb_000184_040--Hb_001047_010 Hb_000762_020 Hb_000762_020 Hb_000184_040--Hb_000762_020 Hb_004659_120 Hb_004659_120 Hb_000184_040--Hb_004659_120 Hb_023988_020 Hb_023988_020 Hb_000184_040--Hb_023988_020 Hb_002235_400 Hb_002235_400 Hb_000184_040--Hb_002235_400 Hb_006120_200--Hb_000762_020 Hb_001315_020 Hb_001315_020 Hb_006120_200--Hb_001315_020 Hb_006120_200--Hb_006070_010 Hb_002027_300 Hb_002027_300 Hb_006120_200--Hb_002027_300 Hb_000957_040 Hb_000957_040 Hb_006120_200--Hb_000957_040 Hb_001776_110 Hb_001776_110 Hb_002681_020--Hb_001776_110 Hb_003052_100 Hb_003052_100 Hb_002681_020--Hb_003052_100 Hb_004812_010 Hb_004812_010 Hb_002681_020--Hb_004812_010 Hb_000665_040 Hb_000665_040 Hb_002681_020--Hb_000665_040 Hb_004310_030 Hb_004310_030 Hb_002681_020--Hb_004310_030 Hb_008554_020 Hb_008554_020 Hb_002681_020--Hb_008554_020 Hb_001439_120 Hb_001439_120 Hb_007919_050--Hb_001439_120 Hb_007919_050--Hb_006569_020 Hb_159558_030 Hb_159558_030 Hb_007919_050--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_007919_050--Hb_000500_130 Hb_158092_070 Hb_158092_070 Hb_007919_050--Hb_158092_070 Hb_022250_040 Hb_022250_040 Hb_007919_050--Hb_022250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
173.706 14.1331 10.3591 59.5209 77.6993 89.3557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
167.548 101.85 96.0112 23.2723 15.4121

CAGE analysis