Hb_004659_120

Information

Type rubber biosynthesis
Description Gene Name: CPTL
Location Contig4659: 112807-116352
Sequence    

Annotation

kegg
ID rcu:RCOM_0937370
description hypothetical protein
nr
ID XP_012069745.1
description PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
swissprot
ID Q96E22
description Dehydrodolichyl diphosphate syntase complex subunit NUS1 OS=Homo sapiens GN=NUS1 PE=1 SV=1
trembl
ID A0A067LP45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10074 PE=4 SV=1
Gene Ontology
ID GO:0016765
description dehydrodolichyl diphosphate syntase complex subunit nus1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44078: 112808-116344 , PASA_asmbl_44079: 113842-116344 , PASA_asmbl_44080: 112808-116075 , PASA_asmbl_44081: 115393-115607 , PASA_asmbl_44082: 114354-116344
cDNA
(Sanger)
(ID:Location)		 011_N17.ab1: 114209-116344 , 014_P18.ab1: 112808-112957 , 015_L07.ab1: 114354-116344 , 018_P16.ab1: 114339-116344 , 026_D05.ab1: 114360-116344

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004659_120 0.0 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
2 Hb_001205_090 0.0882559446 - - PREDICTED: random slug protein 5 [Jatropha curcas]
3 Hb_000184_040 0.0988277026 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
4 Hb_023226_090 0.1124585489 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
5 Hb_006831_010 0.1153356583 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_000762_020 0.1186585003 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
7 Hb_010174_120 0.1193593455 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
8 Hb_000345_040 0.1207069079 rubber biosynthesis Gene Name: REF4 -
9 Hb_001696_030 0.1215585981 - - cytochrome P450, putative [Ricinus communis]
10 Hb_010483_020 0.1220929968 - - latex allergen [Hevea brasiliensis]
11 Hb_007766_010 0.1230686537 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
12 Hb_000481_020 0.1264758884 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
13 Hb_006132_060 0.1280001688 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
14 Hb_004032_440 0.1288858514 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
15 Hb_001017_090 0.1289348044 - - -
16 Hb_023988_020 0.1297408305 - - PREDICTED: transmembrane protein 19 [Prunus mume]
17 Hb_004787_090 0.1298748834 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
18 Hb_048141_010 0.1306707814 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
19 Hb_092100_020 0.1326155162 - - strictosidine synthase, putative [Ricinus communis]
20 Hb_008408_030 0.133146403 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004659_120 Hb_004659_120 Hb_001205_090 Hb_001205_090 Hb_004659_120--Hb_001205_090 Hb_000184_040 Hb_000184_040 Hb_004659_120--Hb_000184_040 Hb_023226_090 Hb_023226_090 Hb_004659_120--Hb_023226_090 Hb_006831_010 Hb_006831_010 Hb_004659_120--Hb_006831_010 Hb_000762_020 Hb_000762_020 Hb_004659_120--Hb_000762_020 Hb_010174_120 Hb_010174_120 Hb_004659_120--Hb_010174_120 Hb_010483_020 Hb_010483_020 Hb_001205_090--Hb_010483_020 Hb_001696_030 Hb_001696_030 Hb_001205_090--Hb_001696_030 Hb_023988_020 Hb_023988_020 Hb_001205_090--Hb_023988_020 Hb_001017_090 Hb_001017_090 Hb_001205_090--Hb_001017_090 Hb_007766_010 Hb_007766_010 Hb_001205_090--Hb_007766_010 Hb_001047_010 Hb_001047_010 Hb_000184_040--Hb_001047_010 Hb_000184_040--Hb_000762_020 Hb_000481_020 Hb_000481_020 Hb_000184_040--Hb_000481_020 Hb_000184_040--Hb_023988_020 Hb_002235_400 Hb_002235_400 Hb_000184_040--Hb_002235_400 Hb_092100_020 Hb_092100_020 Hb_023226_090--Hb_092100_020 Hb_002352_010 Hb_002352_010 Hb_023226_090--Hb_002352_010 Hb_001473_130 Hb_001473_130 Hb_023226_090--Hb_001473_130 Hb_002025_320 Hb_002025_320 Hb_023226_090--Hb_002025_320 Hb_001369_050 Hb_001369_050 Hb_023226_090--Hb_001369_050 Hb_157022_020 Hb_157022_020 Hb_023226_090--Hb_157022_020 Hb_000345_040 Hb_000345_040 Hb_006831_010--Hb_000345_040 Hb_006831_010--Hb_001017_090 Hb_000442_030 Hb_000442_030 Hb_006831_010--Hb_000442_030 Hb_008695_190 Hb_008695_190 Hb_006831_010--Hb_008695_190 Hb_005245_090 Hb_005245_090 Hb_006831_010--Hb_005245_090 Hb_000957_040 Hb_000957_040 Hb_000762_020--Hb_000957_040 Hb_001140_160 Hb_001140_160 Hb_000762_020--Hb_001140_160 Hb_006120_200 Hb_006120_200 Hb_000762_020--Hb_006120_200 Hb_012347_010 Hb_012347_010 Hb_000762_020--Hb_012347_010 Hb_000762_020--Hb_001017_090 Hb_000387_080 Hb_000387_080 Hb_010174_120--Hb_000387_080 Hb_000538_210 Hb_000538_210 Hb_010174_120--Hb_000538_210 Hb_010174_120--Hb_001017_090 Hb_010402_010 Hb_010402_010 Hb_010174_120--Hb_010402_010 Hb_001476_100 Hb_001476_100 Hb_010174_120--Hb_001476_100 Hb_010174_130 Hb_010174_130 Hb_010174_120--Hb_010174_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1066.12 47.5191 54.3644 449.477 811.441 1006.07
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1824.9 644.509 1014.21 130.359 51.3958

CAGE analysis