Hb_010402_010

Information

Type -
Description -
Location Contig10402: 24-4139
Sequence    

Annotation

kegg
ID vvi:100852515
description protein TRANSPARENT TESTA 12-like
nr
ID CDY11095.1
description BnaC06g23470D [Brassica napus]
swissprot
ID -
description -
trembl
ID M4DJZ6
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra016824 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010402_010 0.0 - - BnaC06g23470D [Brassica napus]
2 Hb_000538_210 0.0804023824 - - ATP binding protein, putative [Ricinus communis]
3 Hb_004800_160 0.0982606036 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
4 Hb_010174_120 0.09864214 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
5 Hb_000173_170 0.1005876573 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
6 Hb_002498_100 0.1007414665 - - bcr-associated protein, bap, putative [Ricinus communis]
7 Hb_000025_480 0.1046510945 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
8 Hb_007760_030 0.107470033 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
9 Hb_000029_030 0.1083850527 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
10 Hb_000387_080 0.1122677548 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
11 Hb_011224_080 0.1125167775 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
12 Hb_005357_150 0.1135366865 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_005918_040 0.1138795147 - - hypothetical protein POPTR_0003s04560g [Populus trichocarpa]
14 Hb_065500_050 0.1161790323 - - lipoate-protein ligase B, putative [Ricinus communis]
15 Hb_006693_030 0.116791925 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
16 Hb_000427_030 0.1178046843 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003057_120 0.118071735 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
18 Hb_011174_070 0.1198852854 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
19 Hb_001981_090 0.1222233006 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
20 Hb_001366_220 0.1233188726 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010402_010 Hb_010402_010 Hb_000538_210 Hb_000538_210 Hb_010402_010--Hb_000538_210 Hb_004800_160 Hb_004800_160 Hb_010402_010--Hb_004800_160 Hb_010174_120 Hb_010174_120 Hb_010402_010--Hb_010174_120 Hb_000173_170 Hb_000173_170 Hb_010402_010--Hb_000173_170 Hb_002498_100 Hb_002498_100 Hb_010402_010--Hb_002498_100 Hb_000025_480 Hb_000025_480 Hb_010402_010--Hb_000025_480 Hb_000696_110 Hb_000696_110 Hb_000538_210--Hb_000696_110 Hb_000387_080 Hb_000387_080 Hb_000538_210--Hb_000387_080 Hb_000538_210--Hb_010174_120 Hb_000538_210--Hb_000025_480 Hb_000029_030 Hb_000029_030 Hb_000538_210--Hb_000029_030 Hb_000861_040 Hb_000861_040 Hb_004800_160--Hb_000861_040 Hb_005357_150 Hb_005357_150 Hb_004800_160--Hb_005357_150 Hb_004800_160--Hb_000025_480 Hb_000427_030 Hb_000427_030 Hb_004800_160--Hb_000427_030 Hb_001981_090 Hb_001981_090 Hb_004800_160--Hb_001981_090 Hb_010174_120--Hb_000387_080 Hb_001017_090 Hb_001017_090 Hb_010174_120--Hb_001017_090 Hb_001476_100 Hb_001476_100 Hb_010174_120--Hb_001476_100 Hb_010174_130 Hb_010174_130 Hb_010174_120--Hb_010174_130 Hb_007760_030 Hb_007760_030 Hb_000173_170--Hb_007760_030 Hb_007152_020 Hb_007152_020 Hb_000173_170--Hb_007152_020 Hb_001191_100 Hb_001191_100 Hb_000173_170--Hb_001191_100 Hb_002326_030 Hb_002326_030 Hb_000173_170--Hb_002326_030 Hb_065500_050 Hb_065500_050 Hb_000173_170--Hb_065500_050 Hb_000956_010 Hb_000956_010 Hb_000173_170--Hb_000956_010 Hb_002498_100--Hb_000029_030 Hb_002368_050 Hb_002368_050 Hb_002498_100--Hb_002368_050 Hb_006693_030 Hb_006693_030 Hb_002498_100--Hb_006693_030 Hb_002498_100--Hb_000173_170 Hb_002498_100--Hb_007760_030 Hb_002357_040 Hb_002357_040 Hb_000025_480--Hb_002357_040 Hb_000025_480--Hb_007760_030 Hb_098993_010 Hb_098993_010 Hb_000025_480--Hb_098993_010 Hb_011174_070 Hb_011174_070 Hb_000025_480--Hb_011174_070 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.14364 0.13936 0.240102 0.470241 2.86262 2.38166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03562 2.3596 4.25072 0.488867 0.827917

CAGE analysis