Hb_007760_030

Information

Type transcription factor
Description TF Family: M-type
Location Contig7760: 46626-52962
Sequence    

Annotation

kegg
ID rcu:RCOM_0837230
description mads box protein, putative
nr
ID KDP41216.1
description hypothetical protein JCGZ_15623 [Jatropha curcas]
swissprot
ID Q9M2K8
description Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1
trembl
ID A0A067KYG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15623 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57806: 46730-48726 , PASA_asmbl_57807: 48829-50474 , PASA_asmbl_57808: 51811-52734 , PASA_asmbl_57809: 51882-52492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007760_030 0.0 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
2 Hb_000173_170 0.0588812842 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
3 Hb_007152_020 0.071252101 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
4 Hb_001842_070 0.082096113 - - PREDICTED: uncharacterized protein LOC105637106 [Jatropha curcas]
5 Hb_000025_480 0.0853365046 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
6 Hb_006693_030 0.0854890264 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
7 Hb_011224_080 0.0866701151 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
8 Hb_000956_010 0.090918521 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
9 Hb_002357_040 0.0979335078 - - latex-abundant protein [Hevea brasiliensis]
10 Hb_001191_100 0.0983744867 - - F-actin capping protein beta subunit [Populus trichocarpa]
11 Hb_011174_070 0.0983858995 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
12 Hb_000856_340 0.1001014922 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
13 Hb_000029_030 0.1001250903 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
14 Hb_002368_050 0.1013979907 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010638_020 0.1022253664 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
16 Hb_002498_100 0.1040972914 - - bcr-associated protein, bap, putative [Ricinus communis]
17 Hb_026048_100 0.1050934524 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
18 Hb_001981_090 0.1056390698 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
19 Hb_065500_050 0.1058151312 - - lipoate-protein ligase B, putative [Ricinus communis]
20 Hb_000538_210 0.1061039384 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007760_030 Hb_007760_030 Hb_000173_170 Hb_000173_170 Hb_007760_030--Hb_000173_170 Hb_007152_020 Hb_007152_020 Hb_007760_030--Hb_007152_020 Hb_001842_070 Hb_001842_070 Hb_007760_030--Hb_001842_070 Hb_000025_480 Hb_000025_480 Hb_007760_030--Hb_000025_480 Hb_006693_030 Hb_006693_030 Hb_007760_030--Hb_006693_030 Hb_011224_080 Hb_011224_080 Hb_007760_030--Hb_011224_080 Hb_000173_170--Hb_007152_020 Hb_001191_100 Hb_001191_100 Hb_000173_170--Hb_001191_100 Hb_002326_030 Hb_002326_030 Hb_000173_170--Hb_002326_030 Hb_065500_050 Hb_065500_050 Hb_000173_170--Hb_065500_050 Hb_000956_010 Hb_000956_010 Hb_000173_170--Hb_000956_010 Hb_000418_180 Hb_000418_180 Hb_007152_020--Hb_000418_180 Hb_012340_030 Hb_012340_030 Hb_007152_020--Hb_012340_030 Hb_000107_390 Hb_000107_390 Hb_007152_020--Hb_000107_390 Hb_007152_020--Hb_000956_010 Hb_001842_070--Hb_011224_080 Hb_000317_430 Hb_000317_430 Hb_001842_070--Hb_000317_430 Hb_000365_360 Hb_000365_360 Hb_001842_070--Hb_000365_360 Hb_063134_010 Hb_063134_010 Hb_001842_070--Hb_063134_010 Hb_001842_070--Hb_006693_030 Hb_002357_040 Hb_002357_040 Hb_000025_480--Hb_002357_040 Hb_098993_010 Hb_098993_010 Hb_000025_480--Hb_098993_010 Hb_011174_070 Hb_011174_070 Hb_000025_480--Hb_011174_070 Hb_000538_210 Hb_000538_210 Hb_000025_480--Hb_000538_210 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160 Hb_006693_030--Hb_000956_010 Hb_002368_050 Hb_002368_050 Hb_006693_030--Hb_002368_050 Hb_004899_320 Hb_004899_320 Hb_006693_030--Hb_004899_320 Hb_006693_030--Hb_011224_080 Hb_000029_030 Hb_000029_030 Hb_006693_030--Hb_000029_030 Hb_004662_030 Hb_004662_030 Hb_006693_030--Hb_004662_030 Hb_011224_080--Hb_000029_030 Hb_011224_080--Hb_002368_050 Hb_002659_140 Hb_002659_140 Hb_011224_080--Hb_002659_140 Hb_168918_020 Hb_168918_020 Hb_011224_080--Hb_168918_020 Hb_000556_080 Hb_000556_080 Hb_011224_080--Hb_000556_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0682 1.36836 2.6494 1.90089 14.8471 15.7058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5321 14.6357 18.4219 3.17033 2.10953

CAGE analysis