Hb_000427_030

Information

Type -
Description -
Location Contig427: 53912-57612
Sequence    

Annotation

kegg
ID rcu:RCOM_0422850
description hypothetical protein
nr
ID XP_002524108.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FG14
description Myosin-binding protein 7 OS=Arabidopsis thaliana GN=MYOB7 PE=1 SV=1
trembl
ID B9SDN9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0422850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42054: 54087-57471
cDNA
(Sanger)
(ID:Location)		 014_E22.ab1: 56323-57471

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000427_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011174_070 0.0781624296 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
3 Hb_002903_070 0.0911519922 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
4 Hb_001767_010 0.0929139738 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
5 Hb_004800_160 0.1042323585 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
6 Hb_000025_480 0.1057185445 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
7 Hb_003057_120 0.1080447347 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
8 Hb_002357_040 0.1103029487 - - latex-abundant protein [Hevea brasiliensis]
9 Hb_010638_020 0.1128356313 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
10 Hb_001366_220 0.1155898246 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000380_180 0.1171006676 - - kinase, putative [Ricinus communis]
12 Hb_007760_030 0.1173044542 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
13 Hb_010402_010 0.1178046843 - - BnaC06g23470D [Brassica napus]
14 Hb_000387_080 0.1193632113 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
15 Hb_098993_010 0.1201030436 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
16 Hb_003497_030 0.1204635595 - - ADP-ribosylation factor, putative [Ricinus communis]
17 Hb_000193_250 0.1215052089 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
18 Hb_005227_070 0.1229360708 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_000260_060 0.1256954879 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6 [Jatropha curcas]
20 Hb_005357_150 0.1261512236 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000427_030 Hb_000427_030 Hb_011174_070 Hb_011174_070 Hb_000427_030--Hb_011174_070 Hb_002903_070 Hb_002903_070 Hb_000427_030--Hb_002903_070 Hb_001767_010 Hb_001767_010 Hb_000427_030--Hb_001767_010 Hb_004800_160 Hb_004800_160 Hb_000427_030--Hb_004800_160 Hb_000025_480 Hb_000025_480 Hb_000427_030--Hb_000025_480 Hb_003057_120 Hb_003057_120 Hb_000427_030--Hb_003057_120 Hb_011174_070--Hb_003057_120 Hb_000387_080 Hb_000387_080 Hb_011174_070--Hb_000387_080 Hb_000057_060 Hb_000057_060 Hb_011174_070--Hb_000057_060 Hb_000805_090 Hb_000805_090 Hb_011174_070--Hb_000805_090 Hb_011174_070--Hb_000025_480 Hb_002903_070--Hb_011174_070 Hb_002422_060 Hb_002422_060 Hb_002903_070--Hb_002422_060 Hb_003747_240 Hb_003747_240 Hb_002903_070--Hb_003747_240 Hb_002903_070--Hb_003057_120 Hb_006551_010 Hb_006551_010 Hb_002903_070--Hb_006551_010 Hb_114684_020 Hb_114684_020 Hb_001767_010--Hb_114684_020 Hb_001767_010--Hb_011174_070 Hb_003001_030 Hb_003001_030 Hb_001767_010--Hb_003001_030 Hb_000249_110 Hb_000249_110 Hb_001767_010--Hb_000249_110 Hb_000380_180 Hb_000380_180 Hb_001767_010--Hb_000380_180 Hb_000861_040 Hb_000861_040 Hb_004800_160--Hb_000861_040 Hb_005357_150 Hb_005357_150 Hb_004800_160--Hb_005357_150 Hb_004800_160--Hb_000025_480 Hb_010402_010 Hb_010402_010 Hb_004800_160--Hb_010402_010 Hb_001981_090 Hb_001981_090 Hb_004800_160--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_000025_480--Hb_002357_040 Hb_007760_030 Hb_007760_030 Hb_000025_480--Hb_007760_030 Hb_098993_010 Hb_098993_010 Hb_000025_480--Hb_098993_010 Hb_000538_210 Hb_000538_210 Hb_000025_480--Hb_000538_210 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160 Hb_003057_120--Hb_000387_080 Hb_003057_120--Hb_005357_150 Hb_001366_220 Hb_001366_220 Hb_003057_120--Hb_001366_220 Hb_003057_120--Hb_001981_090 Hb_003057_120--Hb_000805_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.517 16.0349 6.12927 22.3718 167.719 125.859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.239 101.533 230.887 22.7699 15.6959

CAGE analysis