Hb_001767_010

Information

Type -
Description -
Location Contig1767: 10625-19280
Sequence    

Annotation

kegg
ID rcu:RCOM_0607350
description hypothetical protein
nr
ID XP_011002267.1
description PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
swissprot
ID Q8GYD9
description Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1
trembl
ID A0A067LCF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06598 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable rna helicase sde3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16947: 14800-16289 , PASA_asmbl_16948: 15668-16159 , PASA_asmbl_16949: 16357-19091
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001767_010 0.0 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
2 Hb_114684_020 0.0897882047 - - beta-1,3-glucanase [Hevea brasiliensis]
3 Hb_000427_030 0.0929139738 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011174_070 0.0996903235 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
5 Hb_003001_030 0.1051212131 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
6 Hb_000249_110 0.1080430352 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
7 Hb_000380_180 0.1083011835 - - kinase, putative [Ricinus communis]
8 Hb_027751_020 0.1148306562 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
9 Hb_003497_030 0.1174779675 - - ADP-ribosylation factor, putative [Ricinus communis]
10 Hb_000387_080 0.1228111915 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
11 Hb_004800_160 0.1247087256 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
12 Hb_002903_070 0.1269563728 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
13 Hb_002609_260 0.1287603966 - - CCCH-type zinc finger protein [Hevea brasiliensis]
14 Hb_002200_110 0.1295647471 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003747_240 0.1345217237 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
16 Hb_001488_100 0.1349665674 - - -
17 Hb_002357_040 0.1357232723 - - latex-abundant protein [Hevea brasiliensis]
18 Hb_000088_040 0.136129839 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
19 Hb_000025_480 0.1368172994 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
20 Hb_000057_060 0.13684506 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_001767_010 Hb_001767_010 Hb_114684_020 Hb_114684_020 Hb_001767_010--Hb_114684_020 Hb_000427_030 Hb_000427_030 Hb_001767_010--Hb_000427_030 Hb_011174_070 Hb_011174_070 Hb_001767_010--Hb_011174_070 Hb_003001_030 Hb_003001_030 Hb_001767_010--Hb_003001_030 Hb_000249_110 Hb_000249_110 Hb_001767_010--Hb_000249_110 Hb_000380_180 Hb_000380_180 Hb_001767_010--Hb_000380_180 Hb_114684_020--Hb_003001_030 Hb_000304_020 Hb_000304_020 Hb_114684_020--Hb_000304_020 Hb_000771_140 Hb_000771_140 Hb_114684_020--Hb_000771_140 Hb_000387_080 Hb_000387_080 Hb_114684_020--Hb_000387_080 Hb_002609_260 Hb_002609_260 Hb_114684_020--Hb_002609_260 Hb_000427_030--Hb_011174_070 Hb_002903_070 Hb_002903_070 Hb_000427_030--Hb_002903_070 Hb_004800_160 Hb_004800_160 Hb_000427_030--Hb_004800_160 Hb_000025_480 Hb_000025_480 Hb_000427_030--Hb_000025_480 Hb_003057_120 Hb_003057_120 Hb_000427_030--Hb_003057_120 Hb_011174_070--Hb_003057_120 Hb_011174_070--Hb_000387_080 Hb_000057_060 Hb_000057_060 Hb_011174_070--Hb_000057_060 Hb_000805_090 Hb_000805_090 Hb_011174_070--Hb_000805_090 Hb_011174_070--Hb_000025_480 Hb_009510_030 Hb_009510_030 Hb_003001_030--Hb_009510_030 Hb_005730_020 Hb_005730_020 Hb_003001_030--Hb_005730_020 Hb_003001_030--Hb_002609_260 Hb_004126_010 Hb_004126_010 Hb_003001_030--Hb_004126_010 Hb_003001_030--Hb_000249_110 Hb_027751_020 Hb_027751_020 Hb_000249_110--Hb_027751_020 Hb_002843_160 Hb_002843_160 Hb_000249_110--Hb_002843_160 Hb_000249_110--Hb_002609_260 Hb_004884_060 Hb_004884_060 Hb_000249_110--Hb_004884_060 Hb_003906_110 Hb_003906_110 Hb_000249_110--Hb_003906_110 Hb_003497_030 Hb_003497_030 Hb_000380_180--Hb_003497_030 Hb_000380_180--Hb_000427_030 Hb_000260_060 Hb_000260_060 Hb_000380_180--Hb_000260_060 Hb_002739_110 Hb_002739_110 Hb_000380_180--Hb_002739_110 Hb_000249_130 Hb_000249_130 Hb_000380_180--Hb_000249_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
193.029 12.4697 5.02615 13.1403 271.867 183.313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
157.797 117.535 347.049 40.7585 7.34423

CAGE analysis