Hb_027751_020

Information

Type -
Description -
Location Contig27751: 27774-29069
Sequence    

Annotation

kegg
ID bvg:104886652
description uncharacterized LOC104886652
nr
ID XP_010669421.1
description PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCJ3
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027751_020 0.0 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
2 Hb_000249_110 0.0713703532 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
3 Hb_000571_070 0.0740697517 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
4 Hb_002609_260 0.0754757696 - - CCCH-type zinc finger protein [Hevea brasiliensis]
5 Hb_010931_100 0.0783026126 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
6 Hb_000563_540 0.0814897833 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
7 Hb_000264_190 0.0866957607 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
8 Hb_011457_100 0.0957520012 - - ATP binding protein, putative [Ricinus communis]
9 Hb_003001_030 0.1008908027 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
10 Hb_009510_030 0.102051901 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
11 Hb_005488_100 0.1022389089 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
12 Hb_001017_090 0.1028830692 - - -
13 Hb_002450_050 0.1034393153 - - PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]
14 Hb_003497_030 0.1047771464 - - ADP-ribosylation factor, putative [Ricinus communis]
15 Hb_000387_080 0.1054863066 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
16 Hb_005730_020 0.1060493154 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
17 Hb_002506_010 0.1075222764 - - choline transporter-related family protein [Populus trichocarpa]
18 Hb_000442_030 0.1078165303 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003906_110 0.1105031338 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
20 Hb_114684_020 0.1108667804 - - beta-1,3-glucanase [Hevea brasiliensis]

Gene co-expression network

sample Hb_027751_020 Hb_027751_020 Hb_000249_110 Hb_000249_110 Hb_027751_020--Hb_000249_110 Hb_000571_070 Hb_000571_070 Hb_027751_020--Hb_000571_070 Hb_002609_260 Hb_002609_260 Hb_027751_020--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_027751_020--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_027751_020--Hb_000563_540 Hb_000264_190 Hb_000264_190 Hb_027751_020--Hb_000264_190 Hb_002843_160 Hb_002843_160 Hb_000249_110--Hb_002843_160 Hb_000249_110--Hb_002609_260 Hb_004884_060 Hb_004884_060 Hb_000249_110--Hb_004884_060 Hb_003001_030 Hb_003001_030 Hb_000249_110--Hb_003001_030 Hb_003906_110 Hb_003906_110 Hb_000249_110--Hb_003906_110 Hb_000571_070--Hb_000563_540 Hb_000571_070--Hb_000264_190 Hb_000571_070--Hb_002609_260 Hb_002301_320 Hb_002301_320 Hb_000571_070--Hb_002301_320 Hb_000571_070--Hb_010931_100 Hb_002609_260--Hb_000264_190 Hb_002609_260--Hb_010931_100 Hb_005730_020 Hb_005730_020 Hb_002609_260--Hb_005730_020 Hb_005488_100 Hb_005488_100 Hb_002609_260--Hb_005488_100 Hb_002609_260--Hb_000563_540 Hb_010931_100--Hb_000264_190 Hb_004545_150 Hb_004545_150 Hb_010931_100--Hb_004545_150 Hb_010931_100--Hb_000563_540 Hb_010931_100--Hb_005488_100 Hb_000563_540--Hb_000264_190 Hb_000563_540--Hb_005730_020 Hb_000264_190--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_000264_190--Hb_009510_030 Hb_002890_220 Hb_002890_220 Hb_000264_190--Hb_002890_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
677.567 16.3135 3.49279 50.5698 492.366 583.076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
428.172 294.095 690.94 63.0031 16.5238

CAGE analysis