Hb_004884_060

Information

Type transcription factor
Description TF Family: G2-like
Location Contig4884: 50471-52654
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12940g
description POPTRDRAFT_668090; hypothetical protein
nr
ID XP_012089799.1
description PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
swissprot
ID Q700D9
description Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2
trembl
ID A0A067JG08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00438 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor at1g14600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45140: 51502-52617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_060 0.0 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
2 Hb_003906_110 0.0798889087 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
3 Hb_000249_110 0.0890097292 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
4 Hb_000907_100 0.0938121895 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
5 Hb_002989_080 0.0967239581 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
6 Hb_007178_010 0.1026046351 - - pseudo-hevein [Hevea brasiliensis]
7 Hb_002843_160 0.1041588027 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
8 Hb_002232_180 0.1184162662 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
9 Hb_004126_010 0.12099011 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
10 Hb_027751_020 0.1223530452 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
11 Hb_010931_100 0.1223821806 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
12 Hb_001102_110 0.1228613989 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
13 Hb_003906_120 0.1234397986 - - -
14 Hb_014067_010 0.1247711753 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
15 Hb_003656_030 0.1259709647 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
16 Hb_005488_100 0.1265593517 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
17 Hb_176022_020 0.1275636615 - - cytochrome P450, putative [Ricinus communis]
18 Hb_002609_260 0.1301470107 - - CCCH-type zinc finger protein [Hevea brasiliensis]
19 Hb_000571_070 0.1309229388 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
20 Hb_002067_160 0.1355363638 - - Protein MLO, putative [Ricinus communis]

Gene co-expression network

sample Hb_004884_060 Hb_004884_060 Hb_003906_110 Hb_003906_110 Hb_004884_060--Hb_003906_110 Hb_000249_110 Hb_000249_110 Hb_004884_060--Hb_000249_110 Hb_000907_100 Hb_000907_100 Hb_004884_060--Hb_000907_100 Hb_002989_080 Hb_002989_080 Hb_004884_060--Hb_002989_080 Hb_007178_010 Hb_007178_010 Hb_004884_060--Hb_007178_010 Hb_002843_160 Hb_002843_160 Hb_004884_060--Hb_002843_160 Hb_003906_120 Hb_003906_120 Hb_003906_110--Hb_003906_120 Hb_010931_100 Hb_010931_100 Hb_003906_110--Hb_010931_100 Hb_003906_110--Hb_007178_010 Hb_003906_110--Hb_002989_080 Hb_003906_110--Hb_000249_110 Hb_027751_020 Hb_027751_020 Hb_000249_110--Hb_027751_020 Hb_000249_110--Hb_002843_160 Hb_002609_260 Hb_002609_260 Hb_000249_110--Hb_002609_260 Hb_003001_030 Hb_003001_030 Hb_000249_110--Hb_003001_030 Hb_000155_070 Hb_000155_070 Hb_000907_100--Hb_000155_070 Hb_000571_070 Hb_000571_070 Hb_000907_100--Hb_000571_070 Hb_002301_020 Hb_002301_020 Hb_000907_100--Hb_002301_020 Hb_004126_010 Hb_004126_010 Hb_000907_100--Hb_004126_010 Hb_000907_100--Hb_003906_110 Hb_002989_080--Hb_002843_160 Hb_000603_200 Hb_000603_200 Hb_002989_080--Hb_000603_200 Hb_002989_080--Hb_007178_010 Hb_004545_150 Hb_004545_150 Hb_002989_080--Hb_004545_150 Hb_002232_180 Hb_002232_180 Hb_002989_080--Hb_002232_180 Hb_007178_010--Hb_002232_180 Hb_007810_040 Hb_007810_040 Hb_007178_010--Hb_007810_040 Hb_002067_160 Hb_002067_160 Hb_007178_010--Hb_002067_160 Hb_005488_100 Hb_005488_100 Hb_007178_010--Hb_005488_100 Hb_007178_010--Hb_010931_100 Hb_000789_190 Hb_000789_190 Hb_002843_160--Hb_000789_190 Hb_014067_010 Hb_014067_010 Hb_002843_160--Hb_014067_010 Hb_002843_160--Hb_003906_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.6833 0.345325 0.975406 1.63807 55.2929 64.6539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.7706 16.0395 50.7205 6.11032 0.85742

CAGE analysis