Hb_000789_190

Information

Type transcription factor
Description TF Family: NAC
Location Contig789: 148202-154399
Sequence    

Annotation

kegg
ID tcc:TCM_037747
description NAC domain containing protein 75 isoform 1
nr
ID KDP33771.1
description hypothetical protein JCGZ_07342 [Jatropha curcas]
swissprot
ID O49459
description NAC domain-containing protein 73 OS=Arabidopsis thaliana GN=NAC073 PE=2 SV=1
trembl
ID A0A067KC39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07342 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain containing protein 75 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58220: 148382-153302 , PASA_asmbl_58221: 153312-153515 , PASA_asmbl_58222: 153659-153800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_190 0.0 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
2 Hb_002843_160 0.089998085 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
3 Hb_000249_110 0.0950479321 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
4 Hb_014067_010 0.1052372236 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
5 Hb_002609_260 0.1125165641 - - CCCH-type zinc finger protein [Hevea brasiliensis]
6 Hb_000571_070 0.1221172505 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
7 Hb_002835_170 0.1237079976 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
8 Hb_000117_040 0.1254226445 - - 30S ribosomal protein S6A [Hevea brasiliensis]
9 Hb_002989_080 0.1259955536 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
10 Hb_002232_180 0.1264044672 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
11 Hb_027751_020 0.1264729678 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
12 Hb_002301_320 0.1268141653 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
13 Hb_000163_290 0.1281035194 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
14 Hb_003060_070 0.1286543326 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_005730_020 0.1309043269 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
16 Hb_002067_160 0.1315231865 - - Protein MLO, putative [Ricinus communis]
17 Hb_000500_310 0.1331870755 - - -
18 Hb_030620_010 0.1346084567 - - -
19 Hb_003001_030 0.13656454 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
20 Hb_000270_420 0.1365739969 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000789_190 Hb_000789_190 Hb_002843_160 Hb_002843_160 Hb_000789_190--Hb_002843_160 Hb_000249_110 Hb_000249_110 Hb_000789_190--Hb_000249_110 Hb_014067_010 Hb_014067_010 Hb_000789_190--Hb_014067_010 Hb_002609_260 Hb_002609_260 Hb_000789_190--Hb_002609_260 Hb_000571_070 Hb_000571_070 Hb_000789_190--Hb_000571_070 Hb_002835_170 Hb_002835_170 Hb_000789_190--Hb_002835_170 Hb_002989_080 Hb_002989_080 Hb_002843_160--Hb_002989_080 Hb_002843_160--Hb_000249_110 Hb_002843_160--Hb_014067_010 Hb_004884_060 Hb_004884_060 Hb_002843_160--Hb_004884_060 Hb_003906_110 Hb_003906_110 Hb_002843_160--Hb_003906_110 Hb_027751_020 Hb_027751_020 Hb_000249_110--Hb_027751_020 Hb_000249_110--Hb_002609_260 Hb_000249_110--Hb_004884_060 Hb_003001_030 Hb_003001_030 Hb_000249_110--Hb_003001_030 Hb_000249_110--Hb_003906_110 Hb_004126_010 Hb_004126_010 Hb_014067_010--Hb_004126_010 Hb_014067_010--Hb_000249_110 Hb_138413_010 Hb_138413_010 Hb_014067_010--Hb_138413_010 Hb_005730_020 Hb_005730_020 Hb_014067_010--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_014067_010--Hb_009510_030 Hb_000264_190 Hb_000264_190 Hb_002609_260--Hb_000264_190 Hb_010931_100 Hb_010931_100 Hb_002609_260--Hb_010931_100 Hb_002609_260--Hb_005730_020 Hb_005488_100 Hb_005488_100 Hb_002609_260--Hb_005488_100 Hb_002609_260--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_002609_260--Hb_000563_540 Hb_000571_070--Hb_027751_020 Hb_000571_070--Hb_000563_540 Hb_000571_070--Hb_000264_190 Hb_000571_070--Hb_002609_260 Hb_002301_320 Hb_002301_320 Hb_000571_070--Hb_002301_320 Hb_000571_070--Hb_010931_100 Hb_011457_100 Hb_011457_100 Hb_002835_170--Hb_011457_100 Hb_001478_050 Hb_001478_050 Hb_002835_170--Hb_001478_050 Hb_001102_010 Hb_001102_010 Hb_002835_170--Hb_001102_010 Hb_002835_170--Hb_002301_320 Hb_116349_150 Hb_116349_150 Hb_002835_170--Hb_116349_150 Hb_001606_070 Hb_001606_070 Hb_002835_170--Hb_001606_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
130.868 7.42748 3.49881 2.2604 83.6508 83.374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.2723 64.6173 97.6673 10.8192 3.3669

CAGE analysis