Hb_011457_100

Information

Type -
Description -
Location Contig11457: 70937-77755
Sequence    

Annotation

kegg
ID rcu:RCOM_0646230
description ATP binding protein, putative
nr
ID XP_002524736.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID F4HZB5
description Protein NETWORKED 1D OS=Arabidopsis thaliana GN=NET1D PE=3 SV=1
trembl
ID B9SFG7
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0646230 PE=4 SV=1
Gene Ontology
ID GO:0016301
description protein networked 1d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04403: 71394-71501 , PASA_asmbl_04404: 71154-75662 , PASA_asmbl_04406: 76418-77174 , PASA_asmbl_04407: 75828-91021
cDNA
(Sanger)
(ID:Location)		 004_K06.ab1: 76743-77058

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011457_100 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_002835_170 0.0636628772 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
3 Hb_001102_010 0.0833376281 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
4 Hb_027751_020 0.0957520012 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
5 Hb_000563_540 0.0973998811 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
6 Hb_002609_260 0.100145631 - - CCCH-type zinc finger protein [Hevea brasiliensis]
7 Hb_000264_190 0.1029628099 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
8 Hb_000571_070 0.1071597577 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
9 Hb_002301_320 0.1130363728 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
10 Hb_001478_050 0.1175322281 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
11 Hb_005730_020 0.1192605413 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
12 Hb_000849_040 0.1209825981 - - transcription factor, putative [Ricinus communis]
13 Hb_010931_100 0.1248178701 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
14 Hb_116349_150 0.1258701952 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
15 Hb_030982_040 0.1282096286 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
16 Hb_001606_070 0.1289287444 - - fimbrin, putative [Ricinus communis]
17 Hb_000500_310 0.129476284 - - -
18 Hb_003497_030 0.1301091132 - - ADP-ribosylation factor, putative [Ricinus communis]
19 Hb_001140_160 0.1318614559 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
20 Hb_000442_030 0.1327041246 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011457_100 Hb_011457_100 Hb_002835_170 Hb_002835_170 Hb_011457_100--Hb_002835_170 Hb_001102_010 Hb_001102_010 Hb_011457_100--Hb_001102_010 Hb_027751_020 Hb_027751_020 Hb_011457_100--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_011457_100--Hb_000563_540 Hb_002609_260 Hb_002609_260 Hb_011457_100--Hb_002609_260 Hb_000264_190 Hb_000264_190 Hb_011457_100--Hb_000264_190 Hb_001478_050 Hb_001478_050 Hb_002835_170--Hb_001478_050 Hb_002835_170--Hb_001102_010 Hb_002301_320 Hb_002301_320 Hb_002835_170--Hb_002301_320 Hb_116349_150 Hb_116349_150 Hb_002835_170--Hb_116349_150 Hb_001606_070 Hb_001606_070 Hb_002835_170--Hb_001606_070 Hb_000078_030 Hb_000078_030 Hb_001102_010--Hb_000078_030 Hb_000787_070 Hb_000787_070 Hb_001102_010--Hb_000787_070 Hb_005016_130 Hb_005016_130 Hb_001102_010--Hb_005016_130 Hb_000193_230 Hb_000193_230 Hb_001102_010--Hb_000193_230 Hb_000249_110 Hb_000249_110 Hb_027751_020--Hb_000249_110 Hb_000571_070 Hb_000571_070 Hb_027751_020--Hb_000571_070 Hb_027751_020--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_027751_020--Hb_010931_100 Hb_027751_020--Hb_000563_540 Hb_027751_020--Hb_000264_190 Hb_000563_540--Hb_000264_190 Hb_000563_540--Hb_010931_100 Hb_000563_540--Hb_002609_260 Hb_005730_020 Hb_005730_020 Hb_000563_540--Hb_005730_020 Hb_000563_540--Hb_000571_070 Hb_002609_260--Hb_000264_190 Hb_002609_260--Hb_010931_100 Hb_002609_260--Hb_005730_020 Hb_005488_100 Hb_005488_100 Hb_002609_260--Hb_005488_100 Hb_000264_190--Hb_010931_100 Hb_000264_190--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_000264_190--Hb_009510_030 Hb_002890_220 Hb_002890_220 Hb_000264_190--Hb_002890_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
183.608 3.07473 0.866344 8.90549 121.162 106.022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
126.626 118.931 180.414 9.14811 3.45035

CAGE analysis