Hb_001478_050

Information

Type -
Description -
Location Contig1478: 20621-25671
Sequence    

Annotation

kegg
ID rcu:RCOM_1508680
description zinc ion binding protein, putative
nr
ID XP_012079980.1
description PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
swissprot
ID Q5BL31
description Uncharacterized protein C6orf106 homolog OS=Danio rerio GN=zgc:101577 PE=2 SV=1
trembl
ID A0A067KFI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11406 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12084: 20764-25376 , PASA_asmbl_12085: 24697-24965
cDNA
(Sanger)
(ID:Location)		 008_O21.ab1: 23605-25372 , 014_F22.ab1: 23615-25372 , 030_F24.ab1: 23584-25364 , 036_O12.ab1: 21993-23201 , 037_A12.ab1: 23661-25372 , 048_A20.ab1: 21945-23201

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001478_050 0.0 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
2 Hb_002835_170 0.0819300351 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
3 Hb_002291_030 0.0836725658 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
4 Hb_005455_070 0.0848603686 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
5 Hb_002326_030 0.0902464826 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
6 Hb_008695_190 0.0975555965 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
7 Hb_007229_060 0.0987603114 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
8 Hb_002928_110 0.103353935 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
9 Hb_001102_010 0.1037552298 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
10 Hb_001606_070 0.106452785 - - fimbrin, putative [Ricinus communis]
11 Hb_004882_020 0.1086625734 - - -
12 Hb_000861_040 0.1094736756 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
13 Hb_001981_090 0.1121196822 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
14 Hb_116349_150 0.1121773727 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
15 Hb_001141_470 0.1135006267 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
16 Hb_002307_090 0.1141706743 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
17 Hb_012522_030 0.1145496547 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_183963_020 0.1147550985 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
19 Hb_001191_100 0.115225089 - - F-actin capping protein beta subunit [Populus trichocarpa]
20 Hb_001366_230 0.1173180674 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001478_050 Hb_001478_050 Hb_002835_170 Hb_002835_170 Hb_001478_050--Hb_002835_170 Hb_002291_030 Hb_002291_030 Hb_001478_050--Hb_002291_030 Hb_005455_070 Hb_005455_070 Hb_001478_050--Hb_005455_070 Hb_002326_030 Hb_002326_030 Hb_001478_050--Hb_002326_030 Hb_008695_190 Hb_008695_190 Hb_001478_050--Hb_008695_190 Hb_007229_060 Hb_007229_060 Hb_001478_050--Hb_007229_060 Hb_011457_100 Hb_011457_100 Hb_002835_170--Hb_011457_100 Hb_001102_010 Hb_001102_010 Hb_002835_170--Hb_001102_010 Hb_002301_320 Hb_002301_320 Hb_002835_170--Hb_002301_320 Hb_116349_150 Hb_116349_150 Hb_002835_170--Hb_116349_150 Hb_001606_070 Hb_001606_070 Hb_002835_170--Hb_001606_070 Hb_002928_110 Hb_002928_110 Hb_002291_030--Hb_002928_110 Hb_012522_030 Hb_012522_030 Hb_002291_030--Hb_012522_030 Hb_002291_030--Hb_002326_030 Hb_002387_060 Hb_002387_060 Hb_002291_030--Hb_002387_060 Hb_092706_020 Hb_092706_020 Hb_002291_030--Hb_092706_020 Hb_005455_070--Hb_002326_030 Hb_001141_470 Hb_001141_470 Hb_005455_070--Hb_001141_470 Hb_005455_070--Hb_008695_190 Hb_001473_130 Hb_001473_130 Hb_005455_070--Hb_001473_130 Hb_001981_090 Hb_001981_090 Hb_005455_070--Hb_001981_090 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_002326_030--Hb_012522_030 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_002326_030--Hb_001473_130 Hb_002326_030--Hb_007229_060 Hb_000072_280 Hb_000072_280 Hb_008695_190--Hb_000072_280 Hb_025087_010 Hb_025087_010 Hb_008695_190--Hb_025087_010 Hb_008695_190--Hb_001981_090 Hb_001366_230 Hb_001366_230 Hb_008695_190--Hb_001366_230 Hb_000809_040 Hb_000809_040 Hb_008695_190--Hb_000809_040 Hb_004882_020 Hb_004882_020 Hb_008695_190--Hb_004882_020 Hb_000983_100 Hb_000983_100 Hb_007229_060--Hb_000983_100 Hb_002307_090 Hb_002307_090 Hb_007229_060--Hb_002307_090 Hb_007229_060--Hb_000861_040 Hb_002794_030 Hb_002794_030 Hb_007229_060--Hb_002794_030 Hb_007229_060--Hb_001981_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3016.96 286.207 80.4963 149.026 1400.46 1661.47
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2344.3 2679.37 3170.2 387.091 116.454

CAGE analysis