Hb_002387_060

Information

Type -
Description -
Location Contig2387: 64420-66619
Sequence    

Annotation

kegg
ID rcu:RCOM_0559900
description hypothetical protein
nr
ID XP_002520266.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S2P7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0559900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25009: 65635-66762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002387_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012522_030 0.0741008555 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_015934_020 0.0773052707 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
4 Hb_000085_300 0.0800763959 - - -
5 Hb_183963_020 0.0842110327 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
6 Hb_000032_220 0.0857128152 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
7 Hb_002291_030 0.0860359197 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
8 Hb_000041_070 0.0903503357 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
9 Hb_012725_110 0.0976360582 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
10 Hb_002326_030 0.1006397572 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
11 Hb_002282_020 0.1010129797 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
12 Hb_000085_250 0.1022061399 - - sodium/hydrogen exchanger, putative [Ricinus communis]
13 Hb_024505_040 0.1028466132 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
14 Hb_006132_060 0.1034728762 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
15 Hb_002685_090 0.1039446398 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
16 Hb_004206_030 0.1061683862 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
17 Hb_005455_070 0.1067285709 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
18 Hb_005000_290 0.107428024 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
19 Hb_025087_010 0.1075631803 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
20 Hb_007021_020 0.110240122 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002387_060 Hb_002387_060 Hb_012522_030 Hb_012522_030 Hb_002387_060--Hb_012522_030 Hb_015934_020 Hb_015934_020 Hb_002387_060--Hb_015934_020 Hb_000085_300 Hb_000085_300 Hb_002387_060--Hb_000085_300 Hb_183963_020 Hb_183963_020 Hb_002387_060--Hb_183963_020 Hb_000032_220 Hb_000032_220 Hb_002387_060--Hb_000032_220 Hb_002291_030 Hb_002291_030 Hb_002387_060--Hb_002291_030 Hb_002326_030 Hb_002326_030 Hb_012522_030--Hb_002326_030 Hb_012522_030--Hb_002291_030 Hb_001711_030 Hb_001711_030 Hb_012522_030--Hb_001711_030 Hb_000419_040 Hb_000419_040 Hb_012522_030--Hb_000419_040 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020 Hb_007810_030 Hb_007810_030 Hb_015934_020--Hb_007810_030 Hb_005000_290 Hb_005000_290 Hb_015934_020--Hb_005000_290 Hb_015934_020--Hb_000032_220 Hb_000078_010 Hb_000078_010 Hb_015934_020--Hb_000078_010 Hb_002685_090 Hb_002685_090 Hb_015934_020--Hb_002685_090 Hb_000085_300--Hb_183963_020 Hb_025087_010 Hb_025087_010 Hb_000085_300--Hb_025087_010 Hb_000085_300--Hb_000032_220 Hb_007021_020 Hb_007021_020 Hb_000085_300--Hb_007021_020 Hb_001722_040 Hb_001722_040 Hb_000085_300--Hb_001722_040 Hb_183963_020--Hb_025087_010 Hb_183963_020--Hb_001722_040 Hb_001366_230 Hb_001366_230 Hb_183963_020--Hb_001366_230 Hb_183963_020--Hb_007021_020 Hb_001396_220 Hb_001396_220 Hb_000032_220--Hb_001396_220 Hb_002078_460 Hb_002078_460 Hb_000032_220--Hb_002078_460 Hb_000032_220--Hb_183963_020 Hb_002352_010 Hb_002352_010 Hb_000032_220--Hb_002352_010 Hb_002928_110 Hb_002928_110 Hb_002291_030--Hb_002928_110 Hb_002291_030--Hb_002326_030 Hb_001478_050 Hb_001478_050 Hb_002291_030--Hb_001478_050 Hb_092706_020 Hb_092706_020 Hb_002291_030--Hb_092706_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
108.722 3.06123 3.54119 12.0178 57.2843 88.4167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
176.447 146.568 161.512 22.7754 5.81294

CAGE analysis