Hb_015934_020

Information

Type -
Description -
Location Contig15934: 9645-12468
Sequence    

Annotation

kegg
ID rcu:RCOM_1194860
description hypothetical protein
nr
ID XP_012077893.1
description PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KDG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13605 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14140: 9517-12463 , PASA_asmbl_14141: 9539-11301 , PASA_asmbl_14142: 9539-12277 , PASA_asmbl_14143: 9542-10580 , PASA_asmbl_14144: 10892-11431
cDNA
(Sanger)
(ID:Location)		 039_K23.ab1: 9533-10390 , 044_J10.ab1: 9533-10519 , 053_J04.ab1: 9534-10457

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015934_020 0.0 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
2 Hb_007810_030 0.0720719594 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
3 Hb_005000_290 0.0772733959 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
4 Hb_002387_060 0.0773052707 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000032_220 0.0804588938 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
6 Hb_000078_010 0.0971870814 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
7 Hb_002685_090 0.0989043672 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
8 Hb_010589_040 0.1039622154 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000367_280 0.1042908076 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
10 Hb_001213_120 0.1042977274 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
11 Hb_000085_300 0.1060294069 - - -
12 Hb_000329_600 0.1062744021 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
13 Hb_001396_220 0.1086390321 - - nuclear transport factor, putative [Ricinus communis]
14 Hb_183963_020 0.1088022033 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
15 Hb_002307_090 0.1095601205 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
16 Hb_004453_140 0.1101882561 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
17 Hb_012522_030 0.1103895301 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_001946_320 0.1115809224 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
19 Hb_002291_030 0.114008547 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
20 Hb_000041_070 0.114979971 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]

Gene co-expression network

sample Hb_015934_020 Hb_015934_020 Hb_007810_030 Hb_007810_030 Hb_015934_020--Hb_007810_030 Hb_005000_290 Hb_005000_290 Hb_015934_020--Hb_005000_290 Hb_002387_060 Hb_002387_060 Hb_015934_020--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_015934_020--Hb_000032_220 Hb_000078_010 Hb_000078_010 Hb_015934_020--Hb_000078_010 Hb_002685_090 Hb_002685_090 Hb_015934_020--Hb_002685_090 Hb_007810_030--Hb_000078_010 Hb_000367_280 Hb_000367_280 Hb_007810_030--Hb_000367_280 Hb_011245_020 Hb_011245_020 Hb_007810_030--Hb_011245_020 Hb_001213_120 Hb_001213_120 Hb_007810_030--Hb_001213_120 Hb_007810_030--Hb_000032_220 Hb_025087_010 Hb_025087_010 Hb_005000_290--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_005000_290--Hb_183963_020 Hb_007229_060 Hb_007229_060 Hb_005000_290--Hb_007229_060 Hb_000329_600 Hb_000329_600 Hb_005000_290--Hb_000329_600 Hb_002307_090 Hb_002307_090 Hb_005000_290--Hb_002307_090 Hb_012522_030 Hb_012522_030 Hb_002387_060--Hb_012522_030 Hb_000085_300 Hb_000085_300 Hb_002387_060--Hb_000085_300 Hb_002387_060--Hb_183963_020 Hb_002387_060--Hb_000032_220 Hb_002291_030 Hb_002291_030 Hb_002387_060--Hb_002291_030 Hb_001396_220 Hb_001396_220 Hb_000032_220--Hb_001396_220 Hb_002078_460 Hb_002078_460 Hb_000032_220--Hb_002078_460 Hb_000032_220--Hb_183963_020 Hb_002352_010 Hb_002352_010 Hb_000032_220--Hb_002352_010 Hb_000078_010--Hb_000367_280 Hb_000078_010--Hb_001213_120 Hb_111648_010 Hb_111648_010 Hb_000078_010--Hb_111648_010 Hb_004297_040 Hb_004297_040 Hb_000078_010--Hb_004297_040 Hb_000270_410 Hb_000270_410 Hb_002685_090--Hb_000270_410 Hb_000041_070 Hb_000041_070 Hb_002685_090--Hb_000041_070 Hb_012725_110 Hb_012725_110 Hb_002685_090--Hb_012725_110 Hb_002685_090--Hb_002387_060 Hb_002936_050 Hb_002936_050 Hb_002685_090--Hb_002936_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
193.598 12.2797 8.07204 25.0239 162.875 224.064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
411.624 450.244 489.774 49.9022 12.7025

CAGE analysis