Hb_001213_120

Information

Type -
Description -
Location Contig1213: 134726-136063
Sequence    

Annotation

kegg
ID brp:103857750
description immediate early response 3-interacting protein 1-like
nr
ID XP_009133221.1
description PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
swissprot
ID O13825
description Protein transport protein yos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yos1 PE=3 SV=1
trembl
ID M4C754
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra000032 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein transport protein yos1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06526: 134764-136044 , PASA_asmbl_06527: 135442-135579
cDNA
(Sanger)
(ID:Location)		 005_O18.ab1: 134878-136042 , 023_O22.ab1: 134761-136044 , 032_J01.ab1: 134824-136050 , 043_A07.ab1: 134764-136044 , 049_H19.ab1: 134802-135932

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001213_120 0.0 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
2 Hb_000367_280 0.0664009723 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
3 Hb_001268_080 0.0748563289 - - catalytic, putative [Ricinus communis]
4 Hb_078633_010 0.0921946844 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
5 Hb_004297_040 0.0949650364 - - acyl CoA reductase [Hevea brasiliensis]
6 Hb_015934_020 0.1042977274 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
7 Hb_007810_030 0.107932845 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
8 Hb_011245_020 0.1094298293 - - Ferrochelatase [Medicago truncatula]
9 Hb_001935_030 0.111259165 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000078_010 0.1120043475 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
11 Hb_002260_090 0.1156912437 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
12 Hb_001278_050 0.1159413071 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
13 Hb_006831_030 0.116641619 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
14 Hb_001102_250 0.1186532057 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
15 Hb_012395_210 0.1209458253 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004206_030 0.1241203079 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
17 Hb_008066_040 0.1248157917 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
18 Hb_002685_090 0.1261960481 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
19 Hb_002936_050 0.1280917443 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
20 Hb_000032_040 0.1300924787 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]

Gene co-expression network

sample Hb_001213_120 Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_001213_120--Hb_000367_280 Hb_001268_080 Hb_001268_080 Hb_001213_120--Hb_001268_080 Hb_078633_010 Hb_078633_010 Hb_001213_120--Hb_078633_010 Hb_004297_040 Hb_004297_040 Hb_001213_120--Hb_004297_040 Hb_015934_020 Hb_015934_020 Hb_001213_120--Hb_015934_020 Hb_007810_030 Hb_007810_030 Hb_001213_120--Hb_007810_030 Hb_000367_280--Hb_001268_080 Hb_011245_020 Hb_011245_020 Hb_000367_280--Hb_011245_020 Hb_000367_280--Hb_007810_030 Hb_000367_280--Hb_004297_040 Hb_000367_280--Hb_078633_010 Hb_001268_080--Hb_078633_010 Hb_001268_080--Hb_011245_020 Hb_006831_030 Hb_006831_030 Hb_001268_080--Hb_006831_030 Hb_001268_080--Hb_004297_040 Hb_072912_020 Hb_072912_020 Hb_078633_010--Hb_072912_020 Hb_005137_020 Hb_005137_020 Hb_078633_010--Hb_005137_020 Hb_000544_110 Hb_000544_110 Hb_078633_010--Hb_000544_110 Hb_004297_040--Hb_078633_010 Hb_004297_040--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_004297_040--Hb_001102_250 Hb_015934_020--Hb_007810_030 Hb_005000_290 Hb_005000_290 Hb_015934_020--Hb_005000_290 Hb_002387_060 Hb_002387_060 Hb_015934_020--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_015934_020--Hb_000032_220 Hb_000078_010 Hb_000078_010 Hb_015934_020--Hb_000078_010 Hb_002685_090 Hb_002685_090 Hb_015934_020--Hb_002685_090 Hb_007810_030--Hb_000078_010 Hb_007810_030--Hb_011245_020 Hb_007810_030--Hb_000032_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.5139 9.92035 3.29856 14.0916 48.181 63.9067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
247.049 257.027 247.07 30.2657 3.43657

CAGE analysis