Hb_004297_040

Information

Type -
Description -
Location Contig4297: 88605-92325
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14720g
description POPTRDRAFT_649125; hypothetical protein
nr
ID AAR88762.1
description acyl CoA reductase [Hevea brasiliensis]
swissprot
ID Q93ZB9
description Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1
trembl
ID Q5QIV3
description Acyl CoA reductase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0080019
description fatty acyl- reductase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42143: 88747-92323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004297_040 0.0 - - acyl CoA reductase [Hevea brasiliensis]
2 Hb_000367_280 0.0913734574 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
3 Hb_001213_120 0.0949650364 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
4 Hb_078633_010 0.1014505141 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
5 Hb_005137_020 0.1020588406 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
6 Hb_001102_250 0.1042042532 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
7 Hb_001268_080 0.10489739 - - catalytic, putative [Ricinus communis]
8 Hb_072912_020 0.1096480041 - - abhydrolase domain containing, putative [Ricinus communis]
9 Hb_005908_040 0.1124087866 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
10 Hb_005615_070 0.1129956112 - - Rab7 [Hevea brasiliensis]
11 Hb_001198_030 0.1153308232 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
12 Hb_000544_110 0.1183809411 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
13 Hb_012395_210 0.1187590131 - - conserved hypothetical protein [Ricinus communis]
14 Hb_103752_010 0.1200239122 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
15 Hb_000078_010 0.1200965554 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
16 Hb_008066_040 0.120851696 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
17 Hb_011245_020 0.1225721437 - - Ferrochelatase [Medicago truncatula]
18 Hb_003060_030 0.1228153141 - - conserved hypothetical protein 16 [Hevea brasiliensis]
19 Hb_007810_030 0.1257507526 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
20 Hb_015934_020 0.1285824203 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]

Gene co-expression network

sample Hb_004297_040 Hb_004297_040 Hb_000367_280 Hb_000367_280 Hb_004297_040--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_004297_040--Hb_001213_120 Hb_078633_010 Hb_078633_010 Hb_004297_040--Hb_078633_010 Hb_005137_020 Hb_005137_020 Hb_004297_040--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_004297_040--Hb_001102_250 Hb_001268_080 Hb_001268_080 Hb_004297_040--Hb_001268_080 Hb_000367_280--Hb_001268_080 Hb_000367_280--Hb_001213_120 Hb_011245_020 Hb_011245_020 Hb_000367_280--Hb_011245_020 Hb_007810_030 Hb_007810_030 Hb_000367_280--Hb_007810_030 Hb_000367_280--Hb_078633_010 Hb_001213_120--Hb_001268_080 Hb_001213_120--Hb_078633_010 Hb_015934_020 Hb_015934_020 Hb_001213_120--Hb_015934_020 Hb_001213_120--Hb_007810_030 Hb_078633_010--Hb_001268_080 Hb_072912_020 Hb_072912_020 Hb_078633_010--Hb_072912_020 Hb_078633_010--Hb_005137_020 Hb_000544_110 Hb_000544_110 Hb_078633_010--Hb_000544_110 Hb_005137_020--Hb_000544_110 Hb_005137_020--Hb_072912_020 Hb_005908_040 Hb_005908_040 Hb_005137_020--Hb_005908_040 Hb_005137_020--Hb_001102_250 Hb_001102_250--Hb_072912_020 Hb_003095_070 Hb_003095_070 Hb_001102_250--Hb_003095_070 Hb_001102_250--Hb_000544_110 Hb_005841_040 Hb_005841_040 Hb_001102_250--Hb_005841_040 Hb_001268_080--Hb_011245_020 Hb_006831_030 Hb_006831_030 Hb_001268_080--Hb_006831_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.3616 1.88876 1.69606 13.9634 67.1894 63.0119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
238.108 327.141 202.191 18.8161 2.94307

CAGE analysis