Hb_005841_040

Information

Type -
Description -
Location Contig5841: 43778-44573
Sequence    

Annotation

kegg
ID cam:101491702
description UPF0057 membrane protein At4g30660-like
nr
ID ADR71296.1
description stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
swissprot
ID Q9SUI0
description UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=1
trembl
ID I3NMQ9
description Stress-induced hydrophobic peptide 1 OS=Hevea brasiliensis GN=SHP1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description upf0057 membrane protein at4g30660-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49911: 43909-44537
cDNA
(Sanger)
(ID:Location)		 002_O08.ab1: 44049-44525 , 003_I05.ab1: 44042-44525 , 008_O06.ab1: 44042-44525 , 016_C01.ab1: 44042-44524 , 033_H15.ab1: 44037-44524

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005841_040 0.0 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
2 Hb_001102_250 0.1010937449 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
3 Hb_002045_230 0.1093365586 - - Ammonium transporter 2 [Theobroma cacao]
4 Hb_011245_020 0.1098632407 - - Ferrochelatase [Medicago truncatula]
5 Hb_003043_120 0.1179446397 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000676_240 0.1183509959 - - thioredoxin H-type 2 [Hevea brasiliensis]
7 Hb_002759_240 0.1247865918 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
8 Hb_000035_440 0.1288759885 - - -
9 Hb_072912_020 0.13149963 - - abhydrolase domain containing, putative [Ricinus communis]
10 Hb_001052_030 0.1323498676 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
11 Hb_001268_080 0.1323966304 - - catalytic, putative [Ricinus communis]
12 Hb_000367_280 0.1328991215 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
13 Hb_008066_040 0.1346883946 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
14 Hb_017862_010 0.1358137217 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
15 Hb_004297_040 0.1402021402 - - acyl CoA reductase [Hevea brasiliensis]
16 Hb_000352_140 0.1425210892 - - -
17 Hb_003060_030 0.1451315178 - - conserved hypothetical protein 16 [Hevea brasiliensis]
18 Hb_000544_110 0.1457008677 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
19 Hb_002918_140 0.1476298046 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
20 Hb_002326_180 0.1480189331 - - Protein Z, putative [Ricinus communis]

Gene co-expression network

sample Hb_005841_040 Hb_005841_040 Hb_001102_250 Hb_001102_250 Hb_005841_040--Hb_001102_250 Hb_002045_230 Hb_002045_230 Hb_005841_040--Hb_002045_230 Hb_011245_020 Hb_011245_020 Hb_005841_040--Hb_011245_020 Hb_003043_120 Hb_003043_120 Hb_005841_040--Hb_003043_120 Hb_000676_240 Hb_000676_240 Hb_005841_040--Hb_000676_240 Hb_002759_240 Hb_002759_240 Hb_005841_040--Hb_002759_240 Hb_072912_020 Hb_072912_020 Hb_001102_250--Hb_072912_020 Hb_003095_070 Hb_003095_070 Hb_001102_250--Hb_003095_070 Hb_000544_110 Hb_000544_110 Hb_001102_250--Hb_000544_110 Hb_005137_020 Hb_005137_020 Hb_001102_250--Hb_005137_020 Hb_004297_040 Hb_004297_040 Hb_001102_250--Hb_004297_040 Hb_001052_030 Hb_001052_030 Hb_002045_230--Hb_001052_030 Hb_002326_180 Hb_002326_180 Hb_002045_230--Hb_002326_180 Hb_000035_440 Hb_000035_440 Hb_002045_230--Hb_000035_440 Hb_000352_140 Hb_000352_140 Hb_002045_230--Hb_000352_140 Hb_000175_130 Hb_000175_130 Hb_002045_230--Hb_000175_130 Hb_011245_020--Hb_003043_120 Hb_006831_030 Hb_006831_030 Hb_011245_020--Hb_006831_030 Hb_000367_280 Hb_000367_280 Hb_011245_020--Hb_000367_280 Hb_001268_080 Hb_001268_080 Hb_011245_020--Hb_001268_080 Hb_007810_030 Hb_007810_030 Hb_011245_020--Hb_007810_030 Hb_017862_010 Hb_017862_010 Hb_011245_020--Hb_017862_010 Hb_003043_120--Hb_017862_010 Hb_003043_120--Hb_001102_250 Hb_003043_120--Hb_006831_030 Hb_034585_050 Hb_034585_050 Hb_003043_120--Hb_034585_050 Hb_000069_100 Hb_000069_100 Hb_003043_120--Hb_000069_100 Hb_000676_240--Hb_002326_180 Hb_000676_240--Hb_017862_010 Hb_002918_140 Hb_002918_140 Hb_000676_240--Hb_002918_140 Hb_000676_240--Hb_002045_230 Hb_001123_120 Hb_001123_120 Hb_000676_240--Hb_001123_120 Hb_001894_170 Hb_001894_170 Hb_002759_240--Hb_001894_170 Hb_001846_070 Hb_001846_070 Hb_002759_240--Hb_001846_070 Hb_000264_020 Hb_000264_020 Hb_002759_240--Hb_000264_020 Hb_146225_010 Hb_146225_010 Hb_002759_240--Hb_146225_010 Hb_002759_240--Hb_001052_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
286.793 13.4335 59.2595 47.6372 171.727 132.596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
474.299 1198.32 760.795 85.0098 30.9947

CAGE analysis