Hb_002045_230

Information

Type -
Description -
Location Contig2045: 205304-215147
Sequence    

Annotation

kegg
ID tcc:TCM_004244
description Ammonium transporter 2
nr
ID XP_007050458.1
description Ammonium transporter 2 [Theobroma cacao]
swissprot
ID Q9FDX9
description Guanine nucleotide-binding protein subunit gamma 1 OS=Arabidopsis thaliana GN=GG1 PE=1 SV=1
trembl
ID A0A061DPI9
description Ammonium transporter OS=Theobroma cacao GN=TCM_004244 PE=3 SV=1
Gene Ontology
ID GO:0044425
description guanine nucleotide-binding protein subunit gamma 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21053: 205205-215264
cDNA
(Sanger)
(ID:Location)		 004_H04.ab1: 205272-215208

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_230 0.0 - - Ammonium transporter 2 [Theobroma cacao]
2 Hb_001052_030 0.1005348721 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
3 Hb_002326_180 0.1042873106 - - Protein Z, putative [Ricinus communis]
4 Hb_005841_040 0.1093365586 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
5 Hb_000035_440 0.1094511528 - - -
6 Hb_000352_140 0.1127050891 - - -
7 Hb_000175_130 0.1166498742 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
8 Hb_008066_040 0.1171254105 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
9 Hb_011245_020 0.1195980801 - - Ferrochelatase [Medicago truncatula]
10 Hb_005841_050 0.121994633 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
11 Hb_000106_090 0.1222732301 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
12 Hb_000676_240 0.1224042705 - - thioredoxin H-type 2 [Hevea brasiliensis]
13 Hb_001102_250 0.1233964532 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
14 Hb_005137_020 0.1263835376 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
15 Hb_146225_010 0.1266904399 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
16 Hb_000184_220 0.127432159 - - hypothetical protein CISIN_1g0207781mg [Citrus sinensis]
17 Hb_072912_020 0.1322006794 - - abhydrolase domain containing, putative [Ricinus communis]
18 Hb_003043_120 0.1333834026 - - conserved hypothetical protein [Ricinus communis]
19 Hb_017862_010 0.1344460068 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
20 Hb_021409_090 0.139905751 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]

Gene co-expression network

sample Hb_002045_230 Hb_002045_230 Hb_001052_030 Hb_001052_030 Hb_002045_230--Hb_001052_030 Hb_002326_180 Hb_002326_180 Hb_002045_230--Hb_002326_180 Hb_005841_040 Hb_005841_040 Hb_002045_230--Hb_005841_040 Hb_000035_440 Hb_000035_440 Hb_002045_230--Hb_000035_440 Hb_000352_140 Hb_000352_140 Hb_002045_230--Hb_000352_140 Hb_000175_130 Hb_000175_130 Hb_002045_230--Hb_000175_130 Hb_146225_010 Hb_146225_010 Hb_001052_030--Hb_146225_010 Hb_000094_110 Hb_000094_110 Hb_001052_030--Hb_000094_110 Hb_005841_050 Hb_005841_050 Hb_001052_030--Hb_005841_050 Hb_002918_140 Hb_002918_140 Hb_001052_030--Hb_002918_140 Hb_000123_160 Hb_000123_160 Hb_001052_030--Hb_000123_160 Hb_000617_050 Hb_000617_050 Hb_002326_180--Hb_000617_050 Hb_000106_090 Hb_000106_090 Hb_002326_180--Hb_000106_090 Hb_001123_120 Hb_001123_120 Hb_002326_180--Hb_001123_120 Hb_000676_240 Hb_000676_240 Hb_002326_180--Hb_000676_240 Hb_002876_360 Hb_002876_360 Hb_002326_180--Hb_002876_360 Hb_001102_250 Hb_001102_250 Hb_005841_040--Hb_001102_250 Hb_011245_020 Hb_011245_020 Hb_005841_040--Hb_011245_020 Hb_003043_120 Hb_003043_120 Hb_005841_040--Hb_003043_120 Hb_005841_040--Hb_000676_240 Hb_002759_240 Hb_002759_240 Hb_005841_040--Hb_002759_240 Hb_000035_440--Hb_005841_050 Hb_000035_440--Hb_002876_360 Hb_000035_440--Hb_005841_040 Hb_002298_050 Hb_002298_050 Hb_000035_440--Hb_002298_050 Hb_017862_010 Hb_017862_010 Hb_000035_440--Hb_017862_010 Hb_000352_140--Hb_005841_050 Hb_000352_140--Hb_011245_020 Hb_000599_090 Hb_000599_090 Hb_000352_140--Hb_000599_090 Hb_000352_140--Hb_000106_090 Hb_000184_220 Hb_000184_220 Hb_000352_140--Hb_000184_220 Hb_000853_240 Hb_000853_240 Hb_000175_130--Hb_000853_240 Hb_000175_130--Hb_002326_180 Hb_000316_100 Hb_000316_100 Hb_000175_130--Hb_000316_100 Hb_000175_130--Hb_001052_030 Hb_000696_220 Hb_000696_220 Hb_000175_130--Hb_000696_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.7623 7.16798 10.5229 26.5162 29.624 71.5369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
121.799 367.94 173.432 21.1987 5.95467

CAGE analysis