Hb_000617_050

Information

Type -
Description -
Location Contig617: 28585-30077
Sequence    

Annotation

kegg
ID rcu:RCOM_1433620
description 50S ribosomal protein L18, putative
nr
ID XP_012088960.1
description PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
swissprot
ID A8IAP8
description 50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=rplR PE=3 SV=1
trembl
ID A0A067JV63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23267 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51258: 30152-30391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_050 0.0 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
2 Hb_002876_360 0.0886839312 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
3 Hb_002326_180 0.0980987791 - - Protein Z, putative [Ricinus communis]
4 Hb_003638_080 0.1095191146 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
5 Hb_003216_100 0.1133595174 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
6 Hb_009252_130 0.1172924751 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
7 Hb_004005_010 0.1182695483 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
8 Hb_000599_090 0.1218374911 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
9 Hb_001616_020 0.1277987305 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
10 Hb_004109_020 0.1280497477 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
11 Hb_002293_030 0.1285645898 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
12 Hb_011689_050 0.1287481684 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
13 Hb_034585_040 0.1292546011 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
14 Hb_000061_480 0.1306307559 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
15 Hb_000144_110 0.1319594378 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
16 Hb_001123_120 0.1320315904 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
17 Hb_000190_060 0.1345159964 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
18 Hb_001248_080 0.1350082404 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
19 Hb_002234_210 0.1356076522 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
20 Hb_016604_020 0.1362259915 - - -

Gene co-expression network

sample Hb_000617_050 Hb_000617_050 Hb_002876_360 Hb_002876_360 Hb_000617_050--Hb_002876_360 Hb_002326_180 Hb_002326_180 Hb_000617_050--Hb_002326_180 Hb_003638_080 Hb_003638_080 Hb_000617_050--Hb_003638_080 Hb_003216_100 Hb_003216_100 Hb_000617_050--Hb_003216_100 Hb_009252_130 Hb_009252_130 Hb_000617_050--Hb_009252_130 Hb_004005_010 Hb_004005_010 Hb_000617_050--Hb_004005_010 Hb_002876_360--Hb_002326_180 Hb_000106_090 Hb_000106_090 Hb_002876_360--Hb_000106_090 Hb_002876_360--Hb_003638_080 Hb_000395_240 Hb_000395_240 Hb_002876_360--Hb_000395_240 Hb_000035_440 Hb_000035_440 Hb_002876_360--Hb_000035_440 Hb_002326_180--Hb_000106_090 Hb_001123_120 Hb_001123_120 Hb_002326_180--Hb_001123_120 Hb_000676_240 Hb_000676_240 Hb_002326_180--Hb_000676_240 Hb_002045_230 Hb_002045_230 Hb_002326_180--Hb_002045_230 Hb_000699_040 Hb_000699_040 Hb_003638_080--Hb_000699_040 Hb_000134_020 Hb_000134_020 Hb_003638_080--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_003638_080--Hb_000236_460 Hb_001053_160 Hb_001053_160 Hb_003638_080--Hb_001053_160 Hb_001214_140 Hb_001214_140 Hb_003638_080--Hb_001214_140 Hb_000883_050 Hb_000883_050 Hb_003216_100--Hb_000883_050 Hb_001248_080 Hb_001248_080 Hb_003216_100--Hb_001248_080 Hb_005333_130 Hb_005333_130 Hb_003216_100--Hb_005333_130 Hb_000923_070 Hb_000923_070 Hb_003216_100--Hb_000923_070 Hb_000531_020 Hb_000531_020 Hb_003216_100--Hb_000531_020 Hb_007101_150 Hb_007101_150 Hb_003216_100--Hb_007101_150 Hb_000190_060 Hb_000190_060 Hb_009252_130--Hb_000190_060 Hb_000815_270 Hb_000815_270 Hb_009252_130--Hb_000815_270 Hb_001616_020 Hb_001616_020 Hb_009252_130--Hb_001616_020 Hb_000563_590 Hb_000563_590 Hb_009252_130--Hb_000563_590 Hb_000061_480 Hb_000061_480 Hb_009252_130--Hb_000061_480 Hb_001621_180 Hb_001621_180 Hb_009252_130--Hb_001621_180 Hb_001818_020 Hb_001818_020 Hb_004005_010--Hb_001818_020 Hb_000526_150 Hb_000526_150 Hb_004005_010--Hb_000526_150 Hb_000580_080 Hb_000580_080 Hb_004005_010--Hb_000580_080 Hb_001269_270 Hb_001269_270 Hb_004005_010--Hb_001269_270 Hb_000970_010 Hb_000970_010 Hb_004005_010--Hb_000970_010 Hb_089839_020 Hb_089839_020 Hb_004005_010--Hb_089839_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.6372 8.45209 3.51652 4.21311 18.7022 19.0134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.7694 71.1387 23.1945 5.85059 0.555419

CAGE analysis