Hb_000395_240

Information

Type -
Description -
Location Contig395: 227944-230575
Sequence    

Annotation

kegg
ID cic:CICLE_v10010039mg
description hypothetical protein
nr
ID XP_006450703.1
description hypothetical protein CICLE_v10010039mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4TTR6
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010039mg PE=4 SV=1
Gene Ontology
ID GO:0098542
description hypothetical protein CICLE_v10010039mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39527: 228015-230529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_240 0.0 - - hypothetical protein CICLE_v10010039mg [Citrus clementina]
2 Hb_001863_400 0.0980328835 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
3 Hb_015175_030 0.0994462471 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
4 Hb_000199_070 0.1050811371 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003058_220 0.1058715058 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
6 Hb_002701_050 0.1097336642 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
7 Hb_021409_090 0.1146646022 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
8 Hb_002320_060 0.1151826973 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
9 Hb_001638_260 0.1153101153 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
10 Hb_000283_110 0.1161454108 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
11 Hb_005496_030 0.1180181318 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
12 Hb_000526_040 0.1181004921 - - 60S ribosomal protein L6, putative [Ricinus communis]
13 Hb_002316_060 0.1192738126 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
14 Hb_001248_080 0.1194469719 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
15 Hb_002217_450 0.1195989303 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
16 Hb_000274_020 0.1202729702 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
17 Hb_001247_350 0.1205687442 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
18 Hb_000196_050 0.1222256273 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
19 Hb_001638_020 0.1226836986 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000028_400 0.1232260926 - - Protein SSU72, putative [Ricinus communis]

Gene co-expression network

sample Hb_000395_240 Hb_000395_240 Hb_001863_400 Hb_001863_400 Hb_000395_240--Hb_001863_400 Hb_015175_030 Hb_015175_030 Hb_000395_240--Hb_015175_030 Hb_000199_070 Hb_000199_070 Hb_000395_240--Hb_000199_070 Hb_003058_220 Hb_003058_220 Hb_000395_240--Hb_003058_220 Hb_002701_050 Hb_002701_050 Hb_000395_240--Hb_002701_050 Hb_021409_090 Hb_021409_090 Hb_000395_240--Hb_021409_090 Hb_003994_040 Hb_003994_040 Hb_001863_400--Hb_003994_040 Hb_001248_080 Hb_001248_080 Hb_001863_400--Hb_001248_080 Hb_001141_030 Hb_001141_030 Hb_001863_400--Hb_001141_030 Hb_003203_040 Hb_003203_040 Hb_001863_400--Hb_003203_040 Hb_003455_040 Hb_003455_040 Hb_001863_400--Hb_003455_040 Hb_076626_010 Hb_076626_010 Hb_001863_400--Hb_076626_010 Hb_004032_100 Hb_004032_100 Hb_015175_030--Hb_004032_100 Hb_000283_110 Hb_000283_110 Hb_015175_030--Hb_000283_110 Hb_001505_020 Hb_001505_020 Hb_015175_030--Hb_001505_020 Hb_001998_050 Hb_001998_050 Hb_015175_030--Hb_001998_050 Hb_000227_230 Hb_000227_230 Hb_015175_030--Hb_000227_230 Hb_000274_020 Hb_000274_020 Hb_015175_030--Hb_000274_020 Hb_000199_070--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000199_070--Hb_011161_050 Hb_000199_070--Hb_002701_050 Hb_008847_020 Hb_008847_020 Hb_000199_070--Hb_008847_020 Hb_130291_010 Hb_130291_010 Hb_000199_070--Hb_130291_010 Hb_000199_070--Hb_021409_090 Hb_005224_050 Hb_005224_050 Hb_003058_220--Hb_005224_050 Hb_003058_220--Hb_002701_050 Hb_000419_130 Hb_000419_130 Hb_003058_220--Hb_000419_130 Hb_001247_350 Hb_001247_350 Hb_003058_220--Hb_001247_350 Hb_000645_190 Hb_000645_190 Hb_003058_220--Hb_000645_190 Hb_004007_100 Hb_004007_100 Hb_002701_050--Hb_004007_100 Hb_002701_050--Hb_015175_030 Hb_001242_110 Hb_001242_110 Hb_002701_050--Hb_001242_110 Hb_000526_040 Hb_000526_040 Hb_002701_050--Hb_000526_040 Hb_148209_080 Hb_148209_080 Hb_002701_050--Hb_148209_080 Hb_002217_450 Hb_002217_450 Hb_021409_090--Hb_002217_450 Hb_187083_010 Hb_187083_010 Hb_021409_090--Hb_187083_010 Hb_000236_460 Hb_000236_460 Hb_021409_090--Hb_000236_460 Hb_021409_090--Hb_011161_050 Hb_003561_030 Hb_003561_030 Hb_021409_090--Hb_003561_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.12428 3.16685 1.26328 4.02901 4.49301 10.2406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.53801 22.2717 9.35972 1.68609 1.36434

CAGE analysis