Hb_148209_080

Information

Type -
Description -
Location Contig148209: 68452-69862
Sequence    

Annotation

kegg
ID tcc:TCM_046999
description MED32, putative
nr
ID XP_007042754.1
description MED32, putative [Theobroma cacao]
swissprot
ID Q84VW5
description Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana GN=MED32 PE=1 SV=1
trembl
ID A0A061E0U2
description MED32, putative OS=Theobroma cacao GN=TCM_046999 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 32-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12156: 66519-69851 , PASA_asmbl_12157: 66565-69840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148209_080 0.0 - - MED32, putative [Theobroma cacao]
2 Hb_001242_110 0.068096206 - - 40S ribosomal protein S18, putative [Ricinus communis]
3 Hb_000340_140 0.0791070725 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
4 Hb_000230_540 0.0800604169 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
5 Hb_004032_100 0.0809765019 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
6 Hb_000751_130 0.0828674396 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
7 Hb_015175_030 0.0832006609 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
8 Hb_000274_020 0.0884943223 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
9 Hb_000329_310 0.0887891008 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
10 Hb_005400_030 0.089017051 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
11 Hb_002701_050 0.0899502057 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
12 Hb_004007_100 0.0908586991 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
13 Hb_001009_300 0.0968212567 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
14 Hb_005117_010 0.0982222945 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
15 Hb_000024_080 0.0994163618 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
16 Hb_000380_190 0.0999184434 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
17 Hb_000227_230 0.1002991064 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
18 Hb_000087_020 0.1018650332 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
19 Hb_000028_140 0.1022874701 - - surfeit locus protein, putative [Ricinus communis]
20 Hb_000444_050 0.1033437663 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_148209_080 Hb_148209_080 Hb_001242_110 Hb_001242_110 Hb_148209_080--Hb_001242_110 Hb_000340_140 Hb_000340_140 Hb_148209_080--Hb_000340_140 Hb_000230_540 Hb_000230_540 Hb_148209_080--Hb_000230_540 Hb_004032_100 Hb_004032_100 Hb_148209_080--Hb_004032_100 Hb_000751_130 Hb_000751_130 Hb_148209_080--Hb_000751_130 Hb_015175_030 Hb_015175_030 Hb_148209_080--Hb_015175_030 Hb_000028_140 Hb_000028_140 Hb_001242_110--Hb_000028_140 Hb_003996_020 Hb_003996_020 Hb_001242_110--Hb_003996_020 Hb_000227_230 Hb_000227_230 Hb_001242_110--Hb_000227_230 Hb_001242_110--Hb_015175_030 Hb_027073_040 Hb_027073_040 Hb_001242_110--Hb_027073_040 Hb_001383_060 Hb_001383_060 Hb_000340_140--Hb_001383_060 Hb_002963_010 Hb_002963_010 Hb_000340_140--Hb_002963_010 Hb_000086_550 Hb_000086_550 Hb_000340_140--Hb_000086_550 Hb_000170_010 Hb_000170_010 Hb_000340_140--Hb_000170_010 Hb_000283_110 Hb_000283_110 Hb_000340_140--Hb_000283_110 Hb_000221_150 Hb_000221_150 Hb_000340_140--Hb_000221_150 Hb_000230_540--Hb_004032_100 Hb_000024_080 Hb_000024_080 Hb_000230_540--Hb_000024_080 Hb_000230_540--Hb_000751_130 Hb_005117_010 Hb_005117_010 Hb_000230_540--Hb_005117_010 Hb_000205_270 Hb_000205_270 Hb_000230_540--Hb_000205_270 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_001829_060 Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000751_130--Hb_000087_020 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110 Hb_000172_030 Hb_000172_030 Hb_000751_130--Hb_000172_030 Hb_015175_030--Hb_004032_100 Hb_015175_030--Hb_000283_110 Hb_001505_020 Hb_001505_020 Hb_015175_030--Hb_001505_020 Hb_001998_050 Hb_001998_050 Hb_015175_030--Hb_001998_050 Hb_015175_030--Hb_000227_230 Hb_015175_030--Hb_000274_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8371 17.0649 7.4227 16.5517 25.7231 59.5941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.6635 73.5765 40.4182 21.3812 16.4976

CAGE analysis