Hb_000221_150

Information

Type -
Description -
Location Contig221: 198331-200318
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22781: 198335-200431 , PASA_asmbl_22782: 198863-200130 , PASA_asmbl_22783: 198283-200152
cDNA
(Sanger)
(ID:Location)		 004_E18.ab1: 198421-199919 , 013_K02.ab1: 198315-200099 , 025_P17.ab1: 198283-200152 , 040_H04.ab1: 198315-200099 , 052_G16.ab1: 198421-199879

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_150 0.0 - - -
2 Hb_001080_080 0.0735236446 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
3 Hb_000340_140 0.0766973206 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
4 Hb_000028_400 0.0863404898 - - Protein SSU72, putative [Ricinus communis]
5 Hb_000364_030 0.0881141466 - - RNA binding protein, putative [Ricinus communis]
6 Hb_007416_020 0.0928117213 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
7 Hb_000333_090 0.0947379349 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
8 Hb_001300_270 0.0985018005 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
9 Hb_001268_140 0.0988970134 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001383_060 0.0990771769 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_010883_150 0.0999182562 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
12 Hb_001433_050 0.1014753142 - - 60S ribosomal protein L18, putative [Ricinus communis]
13 Hb_002107_120 0.1032248557 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
14 Hb_000364_020 0.1044139967 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
15 Hb_000024_030 0.1044941055 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
16 Hb_005211_190 0.1051992818 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
17 Hb_029584_060 0.1056878264 - - Grave disease carrier protein, putative [Ricinus communis]
18 Hb_000086_550 0.1061284043 - - Os02g0814700 [Oryza sativa Japonica Group]
19 Hb_000120_750 0.1062208696 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
20 Hb_011781_030 0.1069661113 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000221_150 Hb_000221_150 Hb_001080_080 Hb_001080_080 Hb_000221_150--Hb_001080_080 Hb_000340_140 Hb_000340_140 Hb_000221_150--Hb_000340_140 Hb_000028_400 Hb_000028_400 Hb_000221_150--Hb_000028_400 Hb_000364_030 Hb_000364_030 Hb_000221_150--Hb_000364_030 Hb_007416_020 Hb_007416_020 Hb_000221_150--Hb_007416_020 Hb_000333_090 Hb_000333_090 Hb_000221_150--Hb_000333_090 Hb_144598_020 Hb_144598_020 Hb_001080_080--Hb_144598_020 Hb_001080_080--Hb_007416_020 Hb_001080_080--Hb_000028_400 Hb_001045_080 Hb_001045_080 Hb_001080_080--Hb_001045_080 Hb_029584_060 Hb_029584_060 Hb_001080_080--Hb_029584_060 Hb_001383_060 Hb_001383_060 Hb_000340_140--Hb_001383_060 Hb_002963_010 Hb_002963_010 Hb_000340_140--Hb_002963_010 Hb_000086_550 Hb_000086_550 Hb_000340_140--Hb_000086_550 Hb_000170_010 Hb_000170_010 Hb_000340_140--Hb_000170_010 Hb_000283_110 Hb_000283_110 Hb_000340_140--Hb_000283_110 Hb_005590_020 Hb_005590_020 Hb_000028_400--Hb_005590_020 Hb_007575_070 Hb_007575_070 Hb_000028_400--Hb_007575_070 Hb_000567_170 Hb_000567_170 Hb_000028_400--Hb_000567_170 Hb_001248_080 Hb_001248_080 Hb_000028_400--Hb_001248_080 Hb_003053_030 Hb_003053_030 Hb_000364_030--Hb_003053_030 Hb_002374_390 Hb_002374_390 Hb_000364_030--Hb_002374_390 Hb_000181_300 Hb_000181_300 Hb_000364_030--Hb_000181_300 Hb_001191_090 Hb_001191_090 Hb_000364_030--Hb_001191_090 Hb_148200_010 Hb_148200_010 Hb_000364_030--Hb_148200_010 Hb_011644_030 Hb_011644_030 Hb_000364_030--Hb_011644_030 Hb_002431_050 Hb_002431_050 Hb_007416_020--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_007416_020--Hb_010672_060 Hb_000365_080 Hb_000365_080 Hb_007416_020--Hb_000365_080 Hb_003226_210 Hb_003226_210 Hb_007416_020--Hb_003226_210 Hb_007416_020--Hb_029584_060 Hb_084849_020 Hb_084849_020 Hb_000333_090--Hb_084849_020 Hb_010172_030 Hb_010172_030 Hb_000333_090--Hb_010172_030 Hb_001369_050 Hb_001369_050 Hb_000333_090--Hb_001369_050 Hb_000362_210 Hb_000362_210 Hb_000333_090--Hb_000362_210 Hb_002214_050 Hb_002214_050 Hb_000333_090--Hb_002214_050 Hb_100777_010 Hb_100777_010 Hb_000333_090--Hb_100777_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
175.054 128.237 96.9662 125.75 127.337 341.255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
648.48 646.7 297.463 131.002 96.8249

CAGE analysis